PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G17330.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 199aa    MW: 21271.2 Da    PI: 11.0583
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G17330.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.81.6e-192066349
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     i+ k +rqvtfskRr g++KKA+E+S+L +a +a++ fs+ g+++ +
  OGLUM06G17330.1 20 IDGKEKRQVTFSKRRRGLFKKASEISTLSGASIAIVSFSKAGNVFAF 66
                     78899**************************************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    
MGRPRGGTSK GKQKIEMCCI DGKEKRQVTF SKRRRGLFKK ASEISTLSGA SIAIVSFSKA  60
GNVFAFGSPS VDAVLRRHVV AGPSTSTSHA HAGGDVFADD GGDNPEVLNA LKRATDEAAA  120
EVAAEDARQS GVEGKITEAM AAGRRRFWWD AANVEALGEA ELPVFERALH KLRGAVVRRR  180
SGAKPPPPPP RRSKKKLLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-23M-type_MADS family protein