PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G15080.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 455aa MW: 48573.7 Da PI: 4.7349

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G15080.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.7	1.1e-27	180	234	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k++++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQkYR++ OGLUM06G15080.1 180 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIDSLTRHNIASHLQKYRSH 234 6799***************.******************************86 PP
2	Myb_DNA-binding	40.5	6.5e-13	183	232	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT+e++ ++v+av+qlG + +++I + mg +t+ ++ s++qky+ OGLUM06G15080.1 183 VDWTPELHRRFVQAVEQLGIDkaVPSRILEIMGiDSLTRHNIASHLQKYR 232 57***********************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MLAVSPAMCP DIEDRAAVAG DAGMEVVGMS SDDMDQFDFS VDDIDFGDFF LRLEDGDVLP 60 DLEVDPAEIF TDFEAIATSG GEGVQDQEVP TVELLAPADD VGVLDPCGDV VVGEENAAFA 120 GAGEEKGGCN QDDDAGEANA DDRAAAVEAK SSSPSSTTSS SQEAESRHKS SSKSSHGKKK 180 AKVDWTPELH RRFVQAVEQL GIDKAVPSRI LEIMGIDSLT RHNIASHLQK YRSHRKHMIA 240 REAEAASWTQ RRQIYAAGGG AVAKRPESNA WAVPTIGFPP PPPPPPSPAP MQHFARPLHV 300 WGHPTMDPSR VPVWPPRHLV PRGPAPPWVP PPPPSDPAFW HHPYMRGPAH VPTQGTPCMA 360 MPMPAARFPA PPVPGVVPCP MYRPLTPPAL ASKNQQDAQL QLQVQPSSES IDAAIGDVLS 420 KPWLPLPLGL KPPSVDSVMG ELQRQGVANV PPACG

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MLAVSPAMCP DIEDRAAVAG DAGMEVVGMS SDDMDQFDFS VDDIDFGDFF LRLEDGDVLP  60
DLEVDPAEIF TDFEAIATSG GEGVQDQEVP TVELLAPADD VGVLDPCGDV VVGEENAAFA  120
GAGEEKGGCN QDDDAGEANA DDRAAAVEAK SSSPSSTTSS SQEAESRHKS SSKSSHGKKK  180
AKVDWTPELH RRFVQAVEQL GIDKAVPSRI LEIMGIDSLT RHNIASHLQK YRSHRKHMIA  240
REAEAASWTQ RRQIYAAGGG AVAKRPESNA WAVPTIGFPP PPPPPPSPAP MQHFARPLHV  300
WGHPTMDPSR VPVWPPRHLV PRGPAPPWVP PPPPSDPAFW HHPYMRGPAH VPTQGTPCMA  360
MPMPAARFPA PPVPGVVPCP MYRPLTPPAL ASKNQQDAQL QLQVQPSSES IDAAIGDVLS  420
KPWLPLPLGL KPPSVDSVMG ELQRQGVANV PPACG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20570.1	2e-48	G2-like family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G15080.1