PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G13590.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 375aa MW: 42454.9 Da PI: 7.7474

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G13590.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.3	1e-06	4	27	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ff+ G C G+ C F+H+ OGLUM06G13590.2 4 KRVLCKFFMH-GACLKGEYCEFSHD 27 89**8888.***********5 PP
2	zf-CCCH	28.3	3e-09	35	55	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C+yG+rC++ H+ OGLUM06G13590.2 35 VCTFYQK-GSCSYGSRCRYDHV 55 5****.***********7 PP
3	zf-CCCH	24.7	4.1e-08	151	172	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa++G C+yG+ C+ +Hg OGLUM06G13590.2 151 PICS-FAAGGNCPYGEECPQMHG 172 6788.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MSTKRVLCKF FMHGACLKGE YCEFSHDWND QPNNVCTFYQ KGSCSYGSRC RYDHVKVSRN 60 PTVAPPPSSS TTTHASSSLQ PLSFGRPHHV GYQTDSSNPR QQISMDVLAH SGSKPVWRND 120 FQHESVLEDG IDWSISPTVQ NQTTLSPADL PICSFAAGGN CPYGEECPQM HGDLCTTCGK 180 MCLHPYRPDE REEHTKLCEK NHKRLESLKR SQEIECSVCL DRVLSKPTAA ERKFGLLSEC 240 DHPFCISCIR NWRNNSPTSG MDVNSALRAC PICRKLSYYV IPSVLWYFSK EEKLEIIDNY 300 KAKLKSIDCK YFDFGTGTCP FGSSCFYKHA YRDGCLEEVI LRHLDADDGS TVIAKNIRLS 360 DFLSRSQQAS WRKQS

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MSTKRVLCKF FMHGACLKGE YCEFSHDWND QPNNVCTFYQ KGSCSYGSRC RYDHVKVSRN  60
PTVAPPPSSS TTTHASSSLQ PLSFGRPHHV GYQTDSSNPR QQISMDVLAH SGSKPVWRND  120
FQHESVLEDG IDWSISPTVQ NQTTLSPADL PICSFAAGGN CPYGEECPQM HGDLCTTCGK  180
MCLHPYRPDE REEHTKLCEK NHKRLESLKR SQEIECSVCL DRVLSKPTAA ERKFGLLSEC  240
DHPFCISCIR NWRNNSPTSG MDVNSALRAC PICRKLSYYV IPSVLWYFSK EEKLEIIDNY  300
KAKLKSIDCK YFDFGTGTCP FGSSCFYKHA YRDGCLEEVI LRHLDADDGS TVIAKNIRLS  360
DFLSRSQQAS WRKQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	206	211	ESLKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-151	C3H family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G13590.2