PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G12660.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CO-like

Protein Properties

Length: 378aa MW: 40983.6 Da PI: 4.859

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G12660.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.9	7.3e-07	4	45	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ ++e++ +C+++ lC +C + H+ Ht++ OGLUM06G12660.1 4 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45 6*****************************657888889876 PP
2	zf-B_box	24.5	5.8e-08	47	89	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+++ ++++ C + lC++C ++H+ H++++ OGLUM06G12660.1 47 LCDRCASQPAMVRCLVENASLCQNCDWNGHSAgssaagHKRQT 89 7*****************************6688899999876 PP
3	CCT	65	2.1e-22	321	364	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a++RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ OGLUM06G12660.1 321 RDDAITRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 364 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MGALCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC 60 LVENASLCQN CDWNGHSAGS SAAGHKRQTI NCYSGCPSSS ELSKIWTFVS DIPNVAPEPN 120 CEQGISMMSI SDSGVSNQDN AAGDSSLLDI ASATLMSDLG TAGKPKSLIG SSSEAGVNLL 180 PLATDQMAGS VDSTSAKVPY TADQDMFSKD SIYEDFCVDD VDLSFENYEE LFGTSHIQTE 240 QLFDDAGIDS YFESKEIPSG NSDEQPKLMQ PVTSNAVSAD SGMSIPGAKD YQDCGVSPVL 300 LMGEPPWHPP GPEGSFAGAT RDDAITRYKE KKKRRKFDKK IRYASRKARA DVRKRVKGRF 360 VKAGEAYDYD PLCETRSY

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MGALCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC  60
LVENASLCQN CDWNGHSAGS SAAGHKRQTI NCYSGCPSSS ELSKIWTFVS DIPNVAPEPN  120
CEQGISMMSI SDSGVSNQDN AAGDSSLLDI ASATLMSDLG TAGKPKSLIG SSSEAGVNLL  180
PLATDQMAGS VDSTSAKVPY TADQDMFSKD SIYEDFCVDD VDLSFENYEE LFGTSHIQTE  240
QLFDDAGIDS YFESKEIPSG NSDEQPKLMQ PVTSNAVSAD SGMSIPGAKD YQDCGVSPVL  300
LMGEPPWHPP GPEGSFAGAT RDDAITRYKE KKKRRKFDKK IRYASRKARA DVRKRVKGRF  360
VKAGEAYDYD PLCETRSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	331	335	KKKRR
2	331	336	KKKRRK
3	331	357	KKKRRKFDKKIRYASRKARADVRKRVK
4	332	358	KKKRRKFDKKIRYASRKARADVRKRVK
5	332	336	KKRRK
6	333	359	KKKRRKFDKKIRYASRKARADVRKRVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	4e-84	CO-like family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G12660.1