PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G11910.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 229aa    MW: 24100 Da    PI: 6.0836
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G11910.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB158.31.2e-4914108195
            NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                      vreqdr++Pianv+rim++vlP +akis+dake++qecvsefisfvt+ea+d+c+re+rkt++++dl+wa+  lGf+dyv pl++yl++ re e
  OGLUM06G11910.1  14 VREQDRLMPIANVIRIMRRVLPPHAKISDDAKEVIQECVSEFISFVTGEANDRCHREHRKTVTAEDLVWAMDRLGFDDYVPPLTAYLRRMREYE 107
                      69******************************************************************************************99 PP

            NF-YB  95 g 95 
                      g
  OGLUM06G11910.1 108 G 108
                      7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MAAEQPPPAA AAVVREQDRL MPIANVIRIM RRVLPPHAKI SDDAKEVIQE CVSEFISFVT  60
GEANDRCHRE HRKTVTAEDL VWAMDRLGFD DYVPPLTAYL RRMREYEGGG SGGGGRGAAA  120
APAVVPPPPP EDAFRYVQVH HPVYAAPGEP VQGYGYPVAM SSALPAPHVH VGVRGGGQHE  180
VFGGGPAPLA VYYGGAPYGE ASSRGGCSAG DEGSSSSSAS PARVGPNYE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.22e-52NF-YB family protein