PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G11560.3

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 420aa MW: 45210.4 Da PI: 5.9605

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G11560.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.5	7.3e-06	261	300	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR++i +++ L++l+P + sk Ka +L + ++Y++sLq OGLUM06G11560.3 261 RREKISERMKYLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 300 9***************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MNEKDATDLE ERSEASEHGQ ALSFHGGAMF LQEAQIASPA AANNALISMA NPFPIPPGLW 60 NPPSHNMGLG ETSFSSLLGM LSAGAPPPFV ATPGFVDSTA GFPCYNGGNL GAMINHPFPG 120 IHQPLGDFQN GVEPCREIED IEIEGSKNVS QTGEKQQGDG ETTHAVDSSS KELSMPGRNG 180 GAGHDEGTRV SCSKKRKRSG QDGGVKHAEG GEQLATVGSA QKNEDDEKGE PKRSSVASGK 240 SSGKQIKDNA GSPKEDYIHV RREKISERMK YLQDLVPGCS KVTGKAVMLD EIINYVQSLQ 300 RQVEFLSMKL ASVNPTLDFN IERILSKDIF QCRGTTASSA FGFFPDIVHP RLHPPKYTQV 360 GMPSIVNPTD AFGRVIHAPL GTNSAFKEPK HQMPNNLNGE FQDVIEMPFT HDHHGSNDQP

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MNEKDATDLE ERSEASEHGQ ALSFHGGAMF LQEAQIASPA AANNALISMA NPFPIPPGLW  60
NPPSHNMGLG ETSFSSLLGM LSAGAPPPFV ATPGFVDSTA GFPCYNGGNL GAMINHPFPG  120
IHQPLGDFQN GVEPCREIED IEIEGSKNVS QTGEKQQGDG ETTHAVDSSS KELSMPGRNG  180
GAGHDEGTRV SCSKKRKRSG QDGGVKHAEG GEQLATVGSA QKNEDDEKGE PKRSSVASGK  240
SSGKQIKDNA GSPKEDYIHV RREKISERMK YLQDLVPGCS KVTGKAVMLD EIINYVQSLQ  300
RQVEFLSMKL ASVNPTLDFN IERILSKDIF QCRGTTASSA FGFFPDIVHP RLHPPKYTQV  360
GMPSIVNPTD AFGRVIHAPL GTNSAFKEPK HQMPNNLNGE FQDVIEMPFT HDHHGSNDQP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	194	199	KKRKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	4e-55	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G11560.3