PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G11540.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CO-like

Protein Properties

Length: 361aa MW: 39589.7 Da PI: 5.2807

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G11540.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.2	1.2e-06	33	75	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+ + + +C+ + +lC++C H+ H++v OGLUM06G11540.2 33 RPCDGCRAAPSVVYCRADAAYLCASCDARVHSAnrvasrHERV 75 67*****************************657788888776 PP
2	zf-B_box	27.4	7.1e-09	75	120	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 r+C+ +e+ ++ l C+ + lC C ++ H+ H++vp+ OGLUM06G11540.2 75 VRVCEACERAPAALACRADAAALCVACDVQVHSAnplarrHQRVPV 120 689****************************6689999999986 PP
3	CCT	66.4	7.8e-23	292	335	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+k RkFeK+irYe+RKa+Ae RpR+KGrF+k++ OGLUM06G11540.2 292 REARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAKRS 335 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MNYNFGGNVF DQEVGVGGEG GGGGEGSGCP WARPCDGCRA APSVVYCRAD AAYLCASCDA 60 RVHSANRVAS RHERVRVCEA CERAPAALAC RADAAALCVA CDVQVHSANP LARRHQRVPV 120 APLPAVAIPA TSVLAEAVVA TATVLGDKDE EVDSWLLLSK DPDNNNNNNN NNNNNSNSSN 180 NGMYFGQVDE YFDPVGYNSY YDNRIENNQD QQYGMHEQQE QQQQQQEMQK EFAEKEGSEC 240 VVPSQITMLS EQQHSGYGVV GADQAASMTA GVSAYTDSIS NSMSLHFSSM DREARVLRYR 300 EKKKARKFEK TIRYETRKAY AEARPRIKGR FAKRSDVQIE VDQMFSTAAL SDGSYGTVPW 360 F

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MNYNFGGNVF DQEVGVGGEG GGGGEGSGCP WARPCDGCRA APSVVYCRAD AAYLCASCDA  60
RVHSANRVAS RHERVRVCEA CERAPAALAC RADAAALCVA CDVQVHSANP LARRHQRVPV  120
APLPAVAIPA TSVLAEAVVA TATVLGDKDE EVDSWLLLSK DPDNNNNNNN NNNNNSNSSN  180
NGMYFGQVDE YFDPVGYNSY YDNRIENNQD QQYGMHEQQE QQQQQQEMQK EFAEKEGSEC  240
VVPSQITMLS EQQHSGYGVV GADQAASMTA GVSAYTDSIS NSMSLHFSSM DREARVLRYR  300
EKKKARKFEK TIRYETRKAY AEARPRIKGR FAKRSDVQIE VDQMFSTAAL SDGSYGTVPW  360
F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	4e-56	CO-like family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G11540.2