PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G10920.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CO-like

Protein Properties

Length: 451aa MW: 48312.9 Da PI: 4.9465

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G10920.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.4	6e-08	18	59	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +r C+ + + +++++C ++ +lC+ C ++ H+ H+ OGLUM06G10920.1 18 ARACDGCLRRRARWYCAADDAFLCQGCDTSVHSAnplarrHE 59 678*****************************6567777776 PP
2	CCT	67.3	4.1e-23	394	437	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a OGLUM06G10920.1 394 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 437 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MSSTAKAAAA GAVGAKSARA CDGCLRRRAR WYCAADDAFL CQGCDTSVHS ANPLARRHER 60 LRLRPSSPPP LVPPSGSGRR DEAVPAAWFK RKARTPRSHA AKSAAAVGQL LSRRLVVVPE 120 AAAGSGGDSP EERKDEGEIV EEQEQLLYRV PIFDPALSEF CSPPPLEDAA AAVSCCNEDG 180 AVENPTKPSM TTTTATTPPL QFFPDGQANF GRTDAELREF AADMEALLGR GLDDGNDEDS 240 FCMETLGLIE PVDDDAGRVK VEADGDAGMT LAWCHELDTE TSSGEMLDID FDCGSPQAAT 300 TPDEKVGSSG PAAAAAADDD AQLQQSNLAL SLNYEAIIES WGTSPWTDGE RPHVKLDDSW 360 PRDYSGVWMA AAGVFGHGGE EQALTPRLGM DGGREARVSR YREKRRTRLF SKKIRYEVRK 420 LNAEKRPRMK GRFVKRAAAA ATAAVATACV A

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MSSTAKAAAA GAVGAKSARA CDGCLRRRAR WYCAADDAFL CQGCDTSVHS ANPLARRHER  60
LRLRPSSPPP LVPPSGSGRR DEAVPAAWFK RKARTPRSHA AKSAAAVGQL LSRRLVVVPE  120
AAAGSGGDSP EERKDEGEIV EEQEQLLYRV PIFDPALSEF CSPPPLEDAA AAVSCCNEDG  180
AVENPTKPSM TTTTATTPPL QFFPDGQANF GRTDAELREF AADMEALLGR GLDDGNDEDS  240
FCMETLGLIE PVDDDAGRVK VEADGDAGMT LAWCHELDTE TSSGEMLDID FDCGSPQAAT  300
TPDEKVGSSG PAAAAAADDD AQLQQSNLAL SLNYEAIIES WGTSPWTDGE RPHVKLDDSW  360
PRDYSGVWMA AAGVFGHGGE EQALTPRLGM DGGREARVSR YREKRRTRLF SKKIRYEVRK  420
LNAEKRPRMK GRFVKRAAAA ATAAVATACV A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	405	421	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	3e-59	CO-like family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G10920.1