PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G10380.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-X1

Protein Properties

Length: 956aa MW: 103188 Da PI: 7.9539

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G10380.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	21.8	4e-07	226	243	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H Cq +CH+GpC++C OGLUM06G10380.1 226 CGNHACQDICHPGPCGEC 243 ****************** PP
2	zf-NF-X1	23	1.8e-07	284	301	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+C+ +CHeG+CppC OGLUM06G10380.1 284 CGVHRCKVTCHEGDCPPC 301 ****************** PP
3	zf-NF-X1	16.6	1.7e-05	379	397	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H Cq lCH G CppC OGLUM06G10380.1 379 CGQHGCQLLCHSGHCPPCL 397 ******************6 PP
4	zf-NF-X1	19	3.2e-06	489	505	1	17
zf-NF-X1 1 CGkHkCqklCHeGpCpp 17 CG+H C++ CH+ pC+p OGLUM06G10380.1 489 CGMHACNRSCHPSPCDP 505 ***************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 956 aa Download sequence
MVRRSAPVWS CGSCFSIFHL PCIRKWARSP ASAADASDPD SSWRCPGCQS VHAVPARELA 60 YTCFCGRRRE PPNDLFLTPH SCGEPCSKPL EKADPAVKAD DAAATRCPHV CVLQCHPGPC 120 PPCKAFAPDR LCPCGKQTIV RRCADRTTPV TCGQRCDRLL PCRRHRCEKV CHTGPCGDCN 180 VLISARCFCG KKTETLLCGE MELKGNLSEK DGVFSCSEAC SHMLSCGNHA CQDICHPGPC 240 GECELMPGKV TACHCGKTRL LEKRASCLDP IPTCDKVCDK KLPCGVHRCK VTCHEGDCPP 300 CVVRVEQRCR CGSSGQMVEC YKVLEEEFRC NKPCGRKKNC GRHRCSECCC PLSKPLARLE 360 GGNWDPHLCQ IPCGKKLRCG QHGCQLLCHS GHCPPCLETI FNDLTCACGR TSIPPPLPCG 420 TPTPSCPHQC LVSQPCGHPA THQCHFGDCP PCVVPVMREC IGGHVVLRNI PCGSKDIRCN 480 QPCGKNRQCG MHACNRSCHP SPCDPPPANG DASSSTGGRA SCGQVCGAPR RECKHTCTAP 540 CHPSSPCPDL RCEFPMTIAC SCGRITATVP CGAGGTANGD NMFEVSIIQK LPMPLQPVES 600 DGRRVPLGQR KLSCDEDCAK MERKRVLAEA FDITPPNLDA LHFGENSNAS DLLSDLFRRE 660 PKWVMAIEER CKFLVLGKTR GNSSGNLKVH VFCHMTKDKR DAIRVIADRW KLSVQAAGWE 720 PKRFITIHPT PKSKAPARIL GSKPGVSVAA SHPFFDPLVD MDPRLVVAML DLPRDADVSA 780 LVLRFGGECE LVWLNDKNAV AVFNDPARAA TALRRLDYGS AYQGAAVFLP SSSAQPGNVW 840 VAGQKDGVVA TKSSANPWKK ATASEPDPSS GDWTGVLGQA PGSVWRRGGD TVAQVMGTSN 900 RWNALESDAA TSSRPVEESK PAPRTDAVSS AGPSTAPPVS KMQPEVEVDD WEEACE

Sequence ? help Back to Top

Protein Sequence Length: 956 aa Download sequence

MVRRSAPVWS CGSCFSIFHL PCIRKWARSP ASAADASDPD SSWRCPGCQS VHAVPARELA  60
YTCFCGRRRE PPNDLFLTPH SCGEPCSKPL EKADPAVKAD DAAATRCPHV CVLQCHPGPC  120
PPCKAFAPDR LCPCGKQTIV RRCADRTTPV TCGQRCDRLL PCRRHRCEKV CHTGPCGDCN  180
VLISARCFCG KKTETLLCGE MELKGNLSEK DGVFSCSEAC SHMLSCGNHA CQDICHPGPC  240
GECELMPGKV TACHCGKTRL LEKRASCLDP IPTCDKVCDK KLPCGVHRCK VTCHEGDCPP  300
CVVRVEQRCR CGSSGQMVEC YKVLEEEFRC NKPCGRKKNC GRHRCSECCC PLSKPLARLE  360
GGNWDPHLCQ IPCGKKLRCG QHGCQLLCHS GHCPPCLETI FNDLTCACGR TSIPPPLPCG  420
TPTPSCPHQC LVSQPCGHPA THQCHFGDCP PCVVPVMREC IGGHVVLRNI PCGSKDIRCN  480
QPCGKNRQCG MHACNRSCHP SPCDPPPANG DASSSTGGRA SCGQVCGAPR RECKHTCTAP  540
CHPSSPCPDL RCEFPMTIAC SCGRITATVP CGAGGTANGD NMFEVSIIQK LPMPLQPVES  600
DGRRVPLGQR KLSCDEDCAK MERKRVLAEA FDITPPNLDA LHFGENSNAS DLLSDLFRRE  660
PKWVMAIEER CKFLVLGKTR GNSSGNLKVH VFCHMTKDKR DAIRVIADRW KLSVQAAGWE  720
PKRFITIHPT PKSKAPARIL GSKPGVSVAA SHPFFDPLVD MDPRLVVAML DLPRDADVSA  780
LVLRFGGECE LVWLNDKNAV AVFNDPARAA TALRRLDYGS AYQGAAVFLP SSSAQPGNVW  840
VAGQKDGVVA TKSSANPWKK ATASEPDPSS GDWTGVLGQA PGSVWRRGGD TVAQVMGTSN  900
RWNALESDAA TSSRPVEESK PAPRTDAVSS AGPSTAPPVS KMQPEVEVDD WEEACE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X1 family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G10380.1