PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G09840.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 425aa    MW: 46780.4 Da    PI: 8.4244
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G09840.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.25.8e-2357122171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      rk+ksL+ll+++f++l+ +++ + v l+++a++L    v  +rRRiYDi+NVLe+++++ +++kn+++w+g
  OGLUM06G09840.1  57 RKQKSLGLLCTNFVALYDREDVESVGLDDAARRL---GV--ERRRIYDIVNVLESIGMLVRRAKNRYTWIG 122
                      79****************9999************...**..****************************98 PP
2E2F_TDP80.91.1e-25203283171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                      rkeksL+lltq+f+kl+ + e ++++l+e+ak+L+ e     ++++k+RR+YDi+NVL++lnliek     ++k+++rw g
  OGLUM06G09840.1 203 RKEKSLGLLTQNFVKLFLTMEIETISLDEAAKRLLGEghaanNMRTKVRRLYDIANVLSSLNLIEKtqqadSRKPAFRWLG 283
                      79****************************************************************9999999******87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    
MAAAADAPPP PPEVAPPAPA PAPAPAPYQP PRLAVADGAG GGGGGGGKPC RHHAYSRKQK  60
SLGLLCTNFV ALYDREDVES VGLDDAARRL GVERRRIYDI VNVLESIGML VRRAKNRYTW  120
IGFGGVPAAL AELKEMSLRA VSSVASPSLD ETSAANVSDD EDDDKLDDAE GDAESEKLSL  180
SQSIDNPSDK PDAPPCKLRS EHRKEKSLGL LTQNFVKLFL TMEIETISLD EAAKRLLGEG  240
HAANNMRTKV RRLYDIANVL SSLNLIEKTQ QADSRKPAFR WLGQAKRNEG VTVALPPTKT  300
LPNKRAFGTD LTNIDNKRGK LDSTMENRGK PTQDGGSLFN NLQRQLGQEN RSDFVYGPFH  360
PAGARKQEHG NRTVQEKERK SIQDWENLAS SFRPQYQNPG LNDLFGHYME AWRSWYSDLR  420
RDRAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-104E2F/DP family protein