PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G07380.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 272aa    MW: 28476.6 Da    PI: 4.7192
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G07380.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.8e-1769117355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ykGVr ++ +g+Wv+eIr ps+   ++r++lg++ tae Aa+a++aa ++l+g
  OGLUM06G07380.1  69 YKGVRMRS-WGSWVSEIRAPSQ---KTRIWLGSYSTAEAAARAYDAALLCLKG 117
                      9****998.**********964...6************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MAGSHIEVSN TPHTHTEQQQ QQHQTARHNE RSLAFQAIKR FDMVKTAASN GAAAARRVGG  60
GADGKRAAYK GVRMRSWGSW VSEIRAPSQK TRIWLGSYST AEAAARAYDA ALLCLKGSAA  120
ADLNFPVRLP FDLPAAAMSP KSIQRVAAAA AANANANASS SCSAAVFAGV DDDSGGASAS  180
EASTPACSSS DGAASPSPVS SPETVISDVD VDYSLLADIE AFFQSPKCME YAMMDPCSAF  240
FAPPPPPAMA MEEECGWEEE GDIALWSFSS LD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.13e-26ERF family protein