PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G05450.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 225aa    MW: 24169.9 Da    PI: 8.7591
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G05450.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1854103255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + g
  OGLUM06G05450.1  54 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARIMCG 103
                      69******9.**********8.....334**********************98765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MARLTTLITS TSLPPQPRAH SSLSRRERAL SLAATTRNPS PSSRSSAMAR PQQRYRGVRQ  60
RHWGSWVSEI RHPLLKTRIW LGTFETAEDA ARAYDEAARI MCGPRVRTNF PHDVADEAAP  120
PPPPHSAAAA SSSFLSAALV AKLHRFNLAS VQAAQRGNSN DDDSTTSSSA AASSRAVIPS  180
LPAAAGALGN AAATAEWSGG FLEEQYVDQM IEELLDSNFS MEISC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-24ERF family protein