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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OGLUM06G04280.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | MYB | ||||||||
| Protein Properties | Length: 324aa MW: 36884.4 Da PI: 7.0055 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 56 | 9e-18 | 23 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT eEd +lv++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l
OGLUM06G04280.1 23 KGQWTLEEDRKLVKLVEQFGLRKWSHIAQILP-GRVGKQCRERWHNHL 69
799*****************************.*************97 PP
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| 2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 75 | 117 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
++ W++eEd l++ +k+ G++ W+ Ia++++ gRt++++k++w+
OGLUM06G04280.1 75 KDTWSEEEDIVLIQTHKEVGNK-WAEIAKHLP-GRTENSIKNHWN 117
679*******************.*********.***********8 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 324 aa Download sequence |
MNSRLIRRKR ASGKSLKKAN VVKGQWTLEE DRKLVKLVEQ FGLRKWSHIA QILPGRVGKQ 60 CRERWHNHLR PNIKKDTWSE EEDIVLIQTH KEVGNKWAEI AKHLPGRTEN SIKNHWNATK 120 RRQFARRRSR ASSKNPKSGT LLQNYIKSLG IGPIKSSVRQ APSEPTAVSS SSPASTQKLA 180 EVNGKIRPDS NPSNQMDTQG ILTMDENSYI QTNSCEELLV STYDDLCLDM CDHFFETKDE 240 APYQGYNIDD DVDMNYIFNH IDYANKIGNE IDMEMAWDDD VLQDDESAGS SPLETPAGLA 300 QINTVHVKEE MDLIEMVTRT QSCG |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G18770.1 | 8e-66 | MYB family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OGLUM06G04280.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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