PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G03530.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

DBB

Protein Properties

Length: 360aa MW: 38465.8 Da PI: 5.1743

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G03530.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.3	5.4e-07	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ ++ e++ C ++ lC C +e H H++vpl OGLUM06G03530.1 4 QCNACGAAEARVLCCADEAALCTACDEEVHAAnklagkHQRVPL 47 7****99*******************66899999999986 PP
2	zf-B_box	29.8	1.2e-09	63	95	3	35
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 +kC+ ++e +fC +++ llC+dC +++H OGLUM06G03530.1 63 VPKCDICQEASGYFFCLEDRALLCRDCDVSIHT 95 589*****************************3 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MKIQCNACGA AEARVLCCAD EAALCTACDE EVHAANKLAG KHQRVPLLSD DGGAAPAAAA 60 PAVPKCDICQ EASGYFFCLE DRALLCRDCD VSIHTVNSFV SVHQRFLLTG VQVGLDPADP 120 VPPVADKHVK SAGGSVDSAT KHLQRNPTDL SGENSASLPS QNVINGNYSR QSSVTMAKTG 180 QVNWTMSNNT IRSIDLPPKY SSEESPALLL ASHTNTMAAY SNQISKDSDR IYNLPFTGGN 240 GSDSLHDWHV DEFFSNSEFG FAEHGSSKGD NAKPGSAGGS PQCRLAEGLF VEGLLGQVPD 300 NPWTVPEVPS PPTASGLYWQ NNLLCPSYDS TMFVPEISSL ENSQNNFTVS AGLKRRRRQF

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MKIQCNACGA AEARVLCCAD EAALCTACDE EVHAANKLAG KHQRVPLLSD DGGAAPAAAA  60
PAVPKCDICQ EASGYFFCLE DRALLCRDCD VSIHTVNSFV SVHQRFLLTG VQVGLDPADP  120
VPPVADKHVK SAGGSVDSAT KHLQRNPTDL SGENSASLPS QNVINGNYSR QSSVTMAKTG  180
QVNWTMSNNT IRSIDLPPKY SSEESPALLL ASHTNTMAAY SNQISKDSDR IYNLPFTGGN  240
GSDSLHDWHV DEFFSNSEFG FAEHGSSKGD NAKPGSAGGS PQCRLAEGLF VEGLLGQVPD  300
NPWTVPEVPS PPTASGLYWQ NNLLCPSYDS TMFVPEISSL ENSQNNFTVS AGLKRRRRQF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	2e-55	DBB family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G03530.1