PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G03030.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 628aa MW: 66206.9 Da PI: 7.7321

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G03030.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.5	3.8e-30	279	338	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh OGLUM06G03030.1 279 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCADDMSILITTYEGTHNHA 338 58*************************99**************************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence
MKEEMIKGDS KQLASMYMKE EMIKGERQLG THEDRLKDEV IKDGDKISDG NFFKSLQNIS 60 STKEEVCSPG PIERSCMDSS LLNMKAQNKG QDDKLESTRA EMGEVREENE RLKTLLSRIS 120 HDYRSLQTHF YDVLQQGRAK KLPDSPATDI EEPEFVSLRL GTSTSKCKKE DKSTTSSEVK 180 GSTEDFLKIK GGLSLGLSDC RVDANNSEKV QPDVMTLSPE GSFEDARDDT AETTEQWPPS 240 KMLKNLRSVG AEAEDDIAPQ PQVKKARVSV RARCDAPTMN DGCQWRKYGQ KIAKGNPCPR 300 AYYRCTVAAG CPVRKQVQRC ADDMSILITT YEGTHNHALS VSATAMASTT SAAASMLISG 360 SSSTSLAAYP AAAASPALAF DASSKPPLIG GRPFFLPTAA AAAITSTPSY PTITLDLTSP 420 AAAATSSHAA FSLSNRFSHT RYPSTGFTFS GSGPSSAPWP GYLSYGASLS AHPYKAGGGK 480 SSSSFEAALS SINGSRQQGG GGGSGSAPLY QMQQKAAAAA PPPPSVITDT IAKAITADPS 540 FHTALAAAIT SYVGKKGSPP ASGGEDSKVG LKWGEHLGLG LTHSSPSTAT AAAAASSSSQ 600 MFLQPSLGLS GSTTSASTSP VTNREQAH

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence

MKEEMIKGDS KQLASMYMKE EMIKGERQLG THEDRLKDEV IKDGDKISDG NFFKSLQNIS  60
STKEEVCSPG PIERSCMDSS LLNMKAQNKG QDDKLESTRA EMGEVREENE RLKTLLSRIS  120
HDYRSLQTHF YDVLQQGRAK KLPDSPATDI EEPEFVSLRL GTSTSKCKKE DKSTTSSEVK  180
GSTEDFLKIK GGLSLGLSDC RVDANNSEKV QPDVMTLSPE GSFEDARDDT AETTEQWPPS  240
KMLKNLRSVG AEAEDDIAPQ PQVKKARVSV RARCDAPTMN DGCQWRKYGQ KIAKGNPCPR  300
AYYRCTVAAG CPVRKQVQRC ADDMSILITT YEGTHNHALS VSATAMASTT SAAASMLISG  360
SSSTSLAAYP AAAASPALAF DASSKPPLIG GRPFFLPTAA AAAITSTPSY PTITLDLTSP  420
AAAATSSHAA FSLSNRFSHT RYPSTGFTFS GSGPSSAPWP GYLSYGASLS AHPYKAGGGK  480
SSSSFEAALS SINGSRQQGG GGGSGSAPLY QMQQKAAAAA PPPPSVITDT IAKAITADPS  540
FHTALAAAIT SYVGKKGSPP ASGGEDSKVG LKWGEHLGLG LTHSSPSTAT AAAAASSSSQ  600
MFLQPSLGLS GSTTSASTSP VTNREQAH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	2e-64	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G03030.1