PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G02990.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 302aa    MW: 32606.1 Da    PI: 4.4178
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G02990.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.85.3e-1395138955
              AP2   9 dkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  OGLUM06G02990.1  95 HHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 138
                      6779******99966...3.6*************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MNYIMVGYTL DKDYRLYPSS DPPKTLANHI VVGLVNDSGA QTNCFNLDCD GFHLQNSSFA  60
LGSSWSDSLS QHGGERYGVT LSIHRVSQIN LVLLHHHNGR WEARIGRVFG NKYLYLGTYS  120
TQEEAARAYD IAAIEYRGIN AVTNFDLSTY IRWLKPPSSS SAAGTPHHHG GGMVVGADRV  180
LAPAQSYPIS AAADDDVAGC WRPLPSPSSS TTTALSLLLR SSMFQELVAR QPVVEGDDGQ  240
LAVVSGDDAD ADADVKEPPP ESEYGEVFAS DDAAAAAAYG CSMYELDDSF ALIDDSVWNC  300
LI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.26e-27ERF family protein