PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM06G01600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 604aa MW: 64424.2 Da PI: 6.3018 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 396.2 | 3.6e-121 | 204 | 581 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPi 90 lv++L++cA+ +s+g++e+a+ +Larl e+asp+g +pm+R+aayfteALa r++r++++++++ pp+e +++ ++ ++al++++ ++Pi OGLUM06G01600.1 204 LVRALTACADSLSAGNHEAANYYLARLGEMASPAGpTPMHRVAAYFTEALALRVVRMWPHMFDIGPPRELTDDAfggGDDDAMALRILNAITPI 297 6899*******************************************************************9989999**************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 ++f h+t N+ +l+++eg+ervH+iDfdi+qGlQWp Llq+La+R+ +p+++RiTgvg+ s++el+etg rLa++A++lg+ fef++ v++ OGLUM06G01600.1 298 PRFLHFTLNERLLREFEGHERVHVIDFDIKQGLQWPGLLQSLAARAVPPAHVRITGVGE----SRQELQETGARLARVAAALGLAFEFHA-VVD 386 ***********************************************************....9**************************.7** PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsl.eaklp 276 rled++l++L+vk+gE++aVn+vl++hrll+++++l++ +L l +s+ ++++ + e+e ns+++ +rf++al+yy+a fd++ +a+lp OGLUM06G01600.1 387 RLEDVRLWMLHVKRGECVAVNCVLAMHRLLRDDAALTD----FLGLARSTGATILLLGEHEGGGlNSGRWEARFARALRYYAAAFDAVdAAGLP 476 **********************************9999....*******************8777***********************9999** PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveee.......sgslvlgW 362 ++s +r+k E++ ++rei+n+va eg er+erhe+++ Wr+r+e+ GFk++ ++e++a+q +++ r+++ d y+v+ + ++l+l W OGLUM06G01600.1 477 EASPARAKAEEM-FAREIRNAVAFEGPERFERHESFAGWRRRMEDgGGFKNAGIGEREAMQGRMIARMFGPDKYTVQAHgggggggGEALTLRW 569 ************.*******************************9679**********************888****99888888677888*** PP GRAS 363 kdrpLvsvSaWr 374 d+pL++v+aW+ OGLUM06G01600.1 570 LDQPLYTVTAWT 581 ***********6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 604 aa Download sequence |
MSTAQRFDIL PCGFSKRGSR GDGAAPRVAG DARSGATTCS FRTHPAPPVT QSVSWGAKPE 60 PGGNGNGAHR AVKRAHDEDA VEEYGPIVRA KRTRMGGDGD EVWFHQSIAG TMQATAAGEG 120 EEAEEEKVFL VPSAAAFPHG MAAAGPSLAA AKKEEYSKSP SDSSSSSGTD GGSSAMMPPP 180 QPPEFDARNG VPAPGQAERE ALELVRALTA CADSLSAGNH EAANYYLARL GEMASPAGPT 240 PMHRVAAYFT EALALRVVRM WPHMFDIGPP RELTDDAFGG GDDDAMALRI LNAITPIPRF 300 LHFTLNERLL REFEGHERVH VIDFDIKQGL QWPGLLQSLA ARAVPPAHVR ITGVGESRQE 360 LQETGARLAR VAAALGLAFE FHAVVDRLED VRLWMLHVKR GECVAVNCVL AMHRLLRDDA 420 ALTDFLGLAR STGATILLLG EHEGGGLNSG RWEARFARAL RYYAAAFDAV DAAGLPEASP 480 ARAKAEEMFA REIRNAVAFE GPERFERHES FAGWRRRMED GGGFKNAGIG EREAMQGRMI 540 ARMFGPDKYT VQAHGGGGGG GGEALTLRWL DQPLYTVTAW TPAGDGAGGS TVSASTTASH 600 SQQS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 1e-115 | GRAS family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM06G01600.1 |