PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G28360.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 348aa MW: 37520.5 Da PI: 8.4178

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G28360.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	48.4	1.5e-15	274	299	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + +tG C+yGd+C+FaHg OGLUM05G28360.1 274 FKTELCNKWEETGACPYGDQCQFAHG 299 79***********************9 PP
2	zf-CCCH	23.6	8.7e-08	312	337	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt Cr +++G C+yG rC+F H+ OGLUM05G28360.1 312 YKTQVCRMVLAGGVCPYGHRCHFRHS 337 9**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MQEALLPPAH PGRFYSDFGP KPFGGGDQRL SSPNLLTNGG DLFYGCYSPF SPTRVLSPPP 60 PPRRAASFSH CSSSSDSVVD DGDGAGAAAA AAAATEHRLH LAHLALQYQE MANRFELCLS 120 HLADAADEAA ALRQENAELR VANNDLACRI AKFGGRQSSA IALAGDLRRL RLPKEQTVPA 180 LPPPPQSPPA ALMNPVAVPE KQAVLPKSIS IRSTGYQKLN QGGKHRVSKP VNVGSQRVFV 240 GIDGAEGGEH KVGVKKEEPP MGGLEFEVYN QGMFKTELCN KWEETGACPY GDQCQFAHGV 300 AELRPVIRHP RYKTQVCRMV LAGGVCPYGH RCHFRHSITP ADRFSFGH

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MQEALLPPAH PGRFYSDFGP KPFGGGDQRL SSPNLLTNGG DLFYGCYSPF SPTRVLSPPP  60
PPRRAASFSH CSSSSDSVVD DGDGAGAAAA AAAATEHRLH LAHLALQYQE MANRFELCLS  120
HLADAADEAA ALRQENAELR VANNDLACRI AKFGGRQSSA IALAGDLRRL RLPKEQTVPA  180
LPPPPQSPPA ALMNPVAVPE KQAVLPKSIS IRSTGYQKLN QGGKHRVSKP VNVGSQRVFV  240
GIDGAEGGEH KVGVKKEEPP MGGLEFEVYN QGMFKTELCN KWEETGACPY GDQCQFAHGV  300
AELRPVIRHP RYKTQVCRMV LAGGVCPYGH RCHFRHSITP ADRFSFGH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	1e-58	C3H family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G28360.1