PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G28190.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YB

Protein Properties

Length: 146aa MW: 15585.5 Da PI: 4.732

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G28190.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	167.6	1.6e-52	26	119	2	95
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +eqdrflPian++rim++++P+n+ki+kd+ke+vqecvsefisf+tseasdkc +ekrktingddl+w+++tlGfedyveplk+yl+ yre ++ OGLUM05G28190.1 26 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKTINGDDLIWSMGTLGFEDYVEPLKLYLRLYREGDT 119 89****************************************************************************************9665 PP

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence
MSEGFDGTEN GGGGGGGGGG GGGVGKEQDR FLPIANIGRI MRRAVPENGK IAKDSKESVQ 60 ECVSEFISFI TSEASDKCLK EKRKTINGDD LIWSMGTLGF EDYVEPLKLY LRLYREGDTK 120 GSRASELPVK KDVVLNGDPG SSFEGM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38880.7	2e-56	NF-YB family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G28190.1