PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM05G27750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 85aa MW: 9778.77 Da PI: 5.8869 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.7 | 1.1e-07 | 12 | 60 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 + W+ E + + +a + +G + +W+++a+ mg +++++++ ++ + OGLUM05G27750.1 12 KSEWSRKENKMFEEALAYYGEDtpnRWDKVASAMGGIKSAEEIRCHYED 60 578********************************668******99976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence |
MSGSRSSSPN SKSEWSRKEN KMFEEALAYY GEDTPNRWDK VASAMGGIKS AEEIRCHYED 60 LTDDVKTIES GRVQFPKYKT QGYWT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 1e-22 | MYB_related family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM05G27750.1 |