PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G27710.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 634aa MW: 66136.3 Da PI: 7.2683

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G27710.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.9	1.4e-30	372	430	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++tYeg+Hnh+ OGLUM05G27710.1 372 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTVLITTYEGNHNHP 430 7*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence
MESYVGVKRK NVAVGGDVGR EMPVAPPSSS SAAVGMVEFP AAAAGLGYAG MTAKEAGGGY 60 QERRVVVGEM DFFKTAEKRG ERKEPPPPLP LPPATATAAA SGHAGASPDD LSLNKDDLTI 120 NMGLLVGRRR NSGSEESIVD DGGVSSNDEE HREAKAALAV TKAEIGRLSE ENKRLKNMLS 180 NVTTKYNSLQ MQFVTLMQQR RSVLAAPIHQ QELLDPEKKE QEGSQQQQQQ LIPRQFISLG 240 SASLQPDVEA PHSVVVVGGG GGDVCAPSSS NPDAAVPAMM PLPHFDHHNH HHPIHGGRER 300 GSSPAEADHH RHHQQEQPPP QQQQQQLPPS WLPADKVPRF LPGKGPEPVP EAATMRKARV 360 SVRARSDAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA AGCPVRKQVQ RCAEDRTVLI 420 TTYEGNHNHP LPPAAMAMAS TTAAAASMLL SGSMPSADGS LMAGSNFLAR AVLPCSSTVA 480 TISASAPFPT VTLDLTQTAP PPPPASSTQP QPPRPEPAQL QAALAEAARP VALPQLFGQK 540 LYDQSKLSAV QAVAGTKGSD GGALADTVNA ATAAIASDPN FTAVLAAALT SYIGSSSGSG 600 GGGAGGSSGT VQPLMSGGGG DSCSRDDKIG EQNS

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence

MESYVGVKRK NVAVGGDVGR EMPVAPPSSS SAAVGMVEFP AAAAGLGYAG MTAKEAGGGY  60
QERRVVVGEM DFFKTAEKRG ERKEPPPPLP LPPATATAAA SGHAGASPDD LSLNKDDLTI  120
NMGLLVGRRR NSGSEESIVD DGGVSSNDEE HREAKAALAV TKAEIGRLSE ENKRLKNMLS  180
NVTTKYNSLQ MQFVTLMQQR RSVLAAPIHQ QELLDPEKKE QEGSQQQQQQ LIPRQFISLG  240
SASLQPDVEA PHSVVVVGGG GGDVCAPSSS NPDAAVPAMM PLPHFDHHNH HHPIHGGRER  300
GSSPAEADHH RHHQQEQPPP QQQQQQLPPS WLPADKVPRF LPGKGPEPVP EAATMRKARV  360
SVRARSDAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA AGCPVRKQVQ RCAEDRTVLI  420
TTYEGNHNHP LPPAAMAMAS TTAAAASMLL SGSMPSADGS LMAGSNFLAR AVLPCSSTVA  480
TISASAPFPT VTLDLTQTAP PPPPASSTQP QPPRPEPAQL QAALAEAARP VALPQLFGQK  540
LYDQSKLSAV QAVAGTKGSD GGALADTVNA ATAAIASDPN FTAVLAAALT SYIGSSSGSG  600
GGGAGGSSGT VQPLMSGGGG DSCSRDDKIG EQNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04450.1	8e-89	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G27710.1