PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G27580.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 418aa MW: 43798.6 Da PI: 6.6777

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G27580.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.3	3.3e-33	201	258	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt+++Cpvkk+vers +d vv++tYeg+H+h+ OGLUM05G27580.1 201 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCPVKKRVERSYQDAAVVITTYEGKHTHP 258 8********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MSGGGGGGEG FPFHDELASL FAERPPNGAM PGMLQQQQPW SFIDYHHHLM QESAPTTPPL 60 DYEAFAGEFD DDVAPLEEVK RELVVDGVGL FPGGGASAAA AAAAVAGPMT PNSMSVSSTS 120 SEACGVGGGA GGDEESAGKC KKEEEGDGGD DDGKEGSATT KGDGDGEDKN KKGGKGKGKG 180 EKRPRQPRFA FMTKSEVDHL EDGYRWRKYG QKAVKNSPFP RSYYRCTTQK CPVKKRVERS 240 YQDAAVVITT YEGKHTHPIP ATLRGTAHLL GAAAAAHHHG GLQYHHPGHF AAAVGHRLPP 300 QPHDALGGGL LAPPHAQHLH AMQHQMQLAA AAASGGSVHA AAMQQMPQPD HAGLAAIIAS 360 TTGASTTPAP PPATGSAAAA TTPLRMQHFM AQDYGLLQDM FIPSPFLHND DANNNNHR

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MSGGGGGGEG FPFHDELASL FAERPPNGAM PGMLQQQQPW SFIDYHHHLM QESAPTTPPL  60
DYEAFAGEFD DDVAPLEEVK RELVVDGVGL FPGGGASAAA AAAAVAGPMT PNSMSVSSTS  120
SEACGVGGGA GGDEESAGKC KKEEEGDGGD DDGKEGSATT KGDGDGEDKN KKGGKGKGKG  180
EKRPRQPRFA FMTKSEVDHL EDGYRWRKYG QKAVKNSPFP RSYYRCTTQK CPVKKRVERS  240
YQDAAVVITT YEGKHTHPIP ATLRGTAHLL GAAAAAHHHG GLQYHHPGHF AAAVGHRLPP  300
QPHDALGGGL LAPPHAQHLH AMQHQMQLAA AAASGGSVHA AAMQQMPQPD HAGLAAIIAS  360
TTGASTTPAP PPATGSAAAA TTPLRMQHFM AQDYGLLQDM FIPSPFLHND DANNNNHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	3e-43	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G27580.1