PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G27500.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WOX

Protein Properties

Length: 514aa MW: 54509 Da PI: 6.8977

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G27500.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	50.4	3.7e-16	70	129	2	56
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 ++R+++ +eq+++Le F++ +p ++e++++ +l ++ +++V++WFqNr+ + k OGLUM05G27500.1 70 KPRWNPRPEQIRILEGIFNSgMVNPPRDEIRRIRLQLqeygQVGDANVFYWFQNRKSRTK 129 89***************99***********************************99 PP
2	Wus_type_Homeobox	107.7	6.8e-35	69	131	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe +++sG+++P+++ei+ri+ +L+eyG+++d+NVfyWFQNrk+R ++k OGLUM05G27500.1 69 PKPRWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRLQLQEYGQVGDANVFYWFQNRKSRTKNK 131 689**********************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence
MASPNRHWPS MFRSNLACNI QQQQQPDMNG NGSSSSSFLL SPPTAATTGN GKPSLLSSGC 60 EEGTRNPEPK PRWNPRPEQI RILEGIFNSG MVNPPRDEIR RIRLQLQEYG QVGDANVFYW 120 FQNRKSRTKN KLRAAGHHHH HGRAAALPRA SAPPSTNIVL PSAAAAAPLT PPRRHLLAAT 180 SSSSSSSDRS SGSSKSVKPA AAALLTSAAI DLFSPAPAPT TQLPACQLYY HSHPTPLARD 240 DQLITSPESS SLLLQWPVSQ YMPATELGGV LGSSSHTQTP AAITTHPSTI SPSVLLGLCN 300 EALGQHQQET MDDMMITCSN ASKVFDHHSM DDMSCTDAVS AVNRDDEKAR LGLLHYGIGV 360 TAAANPAPHH HHHHHLASPV HDAVSAADAS TAAMILPFTT TAAATPSNVV ATSSALADQL 420 QGLLDAGFLQ GGAAPPPPSA TVVAVSRDDE TMCTKTTSYS FPATMHLNVK MFGEAAVLVR 480 YSGEPVLVDD SGVTVEPLQQ GATYYVLVSE EAVH

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence

MASPNRHWPS MFRSNLACNI QQQQQPDMNG NGSSSSSFLL SPPTAATTGN GKPSLLSSGC  60
EEGTRNPEPK PRWNPRPEQI RILEGIFNSG MVNPPRDEIR RIRLQLQEYG QVGDANVFYW  120
FQNRKSRTKN KLRAAGHHHH HGRAAALPRA SAPPSTNIVL PSAAAAAPLT PPRRHLLAAT  180
SSSSSSSDRS SGSSKSVKPA AAALLTSAAI DLFSPAPAPT TQLPACQLYY HSHPTPLARD  240
DQLITSPESS SLLLQWPVSQ YMPATELGGV LGSSSHTQTP AAITTHPSTI SPSVLLGLCN  300
EALGQHQQET MDDMMITCSN ASKVFDHHSM DDMSCTDAVS AVNRDDEKAR LGLLHYGIGV  360
TAAANPAPHH HHHHHLASPV HDAVSAADAS TAAMILPFTT TAAATPSNVV ATSSALADQL  420
QGLLDAGFLQ GGAAPPPPSA TVVAVSRDDE TMCTKTTSYS FPATMHLNVK MFGEAAVLVR  480
YSGEPVLVDD SGVTVEPLQQ GATYYVLVSE EAVH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	2e-46	WOX family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G27500.1