PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G26380.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

RAV

Protein Properties

Length: 403aa MW: 41996.6 Da PI: 10.0662

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G26380.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.5	1.4e-12	74	122	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r++lg+f + eAa+a++ a+++++g OGLUM05G26380.1 74 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDVAAQRFRG 122 89**9888.8*****......44******99***********98 PP
2	B3	91.1	8.2e-29	201	314	1	92
EEEE-..-HHHHTT-EE--HHH.HTT.......................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 f+k+ tpsdv+k++rlv+pk++ae+h g + +++ l +ed g++W+++++y+++s++yvltkGW++Fvk+ OGLUM05G26380.1 201 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlppptttssvaaaadaaaaG-GECKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKE 293 89*************************888888888777777777743.34499********************************** PP HT--TT-EEEEEE-SSSEE.. CS B3 72 ngLkegDfvvFkldgrsefel 92 +gL +gD v F++ ++++l OGLUM05G26380.1 294 KGLHAGDAVGFYRAAGKNAQL 314 **********765555555 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MDSTSCLLDD ASSGASTGKK AAAAAPAAKA LQRVGSGASA VMDAAEPGAE ADSGGERRGG 60 GGGGGGGGGK LPSSKYKGVV PQPNGRWGAQ IYERHQRVWL GTFTGEAEAA RAYDVAAQRF 120 RGRDAVTNFR PLAESDPEAA VELRFLASRS KAEVVDMLRK HTYLEELAQN KRAFAAISPP 180 PPKHPASSPP SSSAAAREHL FDKTVTPSDV GKLNRLVIPK QHAEKHFPLQ LPPPTTTSSV 240 AAAADAAAAG GECKGVLLNF EDAAGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKGLHAGD 300 AVGFYRAAGK NAQLFIDCKV RAKPTTTAAA AAFLSAVAAA AAPPPAVKAI RLFGVDLLTG 360 AAAPELQDAG GAAMIKSKRA MDAMAESQAH VVFKKQCIEL ALT

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MDSTSCLLDD ASSGASTGKK AAAAAPAAKA LQRVGSGASA VMDAAEPGAE ADSGGERRGG  60
GGGGGGGGGK LPSSKYKGVV PQPNGRWGAQ IYERHQRVWL GTFTGEAEAA RAYDVAAQRF  120
RGRDAVTNFR PLAESDPEAA VELRFLASRS KAEVVDMLRK HTYLEELAQN KRAFAAISPP  180
PPKHPASSPP SSSAAAREHL FDKTVTPSDV GKLNRLVIPK QHAEKHFPLQ LPPPTTTSSV  240
AAAADAAAAG GECKGVLLNF EDAAGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKGLHAGD  300
AVGFYRAAGK NAQLFIDCKV RAKPTTTAAA AAFLSAVAAA AAPPPAVKAI RLFGVDLLTG  360
AAAPELQDAG GAAMIKSKRA MDAMAESQAH VVFKKQCIEL ALT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	58	70	RGGGGGGGGGGGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25560.1	6e-96	RAV family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G26380.1