PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G23780.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 311aa MW: 32615 Da PI: 7.4823

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G23780.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	95.2	1.2e-29	71	173	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+++a+ +i++l+ ++++++ +++ + +a++s ++ OGLUM05G23780.1 71 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLINAAQVEIDKLPPLQFPPH----DHDLVAAAASSMAPppfanggd 160 78*************************************************************99999....2222222221111122223334 PP TCP 89 ............k 89 + OGLUM05G23780.1 161 ghhgasassmleD 173 4443333333330 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MDRSSQYCYT SNHEQLKMIS NNSTNEELGG GGRKAADQPS GGGGAAAAVA NSRHWSASTE 60 SRIVRVSRVF GGKDRHSKVR TVKGLRDRRV RLSVPTAIQL YDLQDRLGLS QPSKVVDWLI 120 NAAQVEIDKL PPLQFPPHDH DLVAAAASSM APPPFANGGD GHHGASASSM LEDGDKAAGG 180 GGMKAFMSLS NSLGLLNAAT MPATLAAHHH HHHHAAAYYA AAESWGNGGN GGHHHDVSHG 240 VSPSAHNSPF PSLLSLAPGS HHQFVFYSPE GGGFAVKEAA AEQFPVDSLD HSQGQLTLSS 300 ARSFLHSGSQ G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	8e-41	TCP family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G23780.1