PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G23510.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 374aa MW: 41467.2 Da PI: 8.1482

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G23510.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	43.9	4.8e-14	85	122	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+C Ckks+Clk+YC Cfa g +Cse+C C+ C+Nk OGLUM05G23510.1 85 CKHCACKKSRCLKLYCPCFAGGGYCSEKCGCQPCFNKA 122 89**********************************85 PP
2	TCR	50	6e-16	170	206	3	39
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++gCnCkks+ClkkYC+C+++g+ Cs C+CedC+N OGLUM05G23510.1 170 RRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCEDCRNP 206 589********************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MEATPISVKP PSPVAAAPPP PPVQVPVPPP PPPPLPPAAA AVEPLPPQPV AVVVAEAEPC 60 SMNQLALTPT PKRQKVEENA DGNGCKHCAC KKSRCLKLYC PCFAGGGYCS EKCGCQPCFN 120 KALYAETVQT TRKVLLSRQK RMSLKINRRS EANVEAVEDA HHSSSSTPPR RGCNCKKSSC 180 LKKYCDCYQD GTGCSLFCRC EDCRNPFGKN EGIMAEESKR FLYTGADLDH SEDEQDFIVE 240 RSPRLQSPIS KESSFQQTPP HIRATNRDTH MFPQAISQWQ PRSWHCSKRQ SNDRVIDDSG 300 EYKNSNHDWQ LAKPEDSYSI SRCVQILNGM AELSQVEKSV APDVFLQAGN REIFISLNGD 360 VRALWLKRKI QNLT

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MEATPISVKP PSPVAAAPPP PPVQVPVPPP PPPPLPPAAA AVEPLPPQPV AVVVAEAEPC  60
SMNQLALTPT PKRQKVEENA DGNGCKHCAC KKSRCLKLYC PCFAGGGYCS EKCGCQPCFN  120
KALYAETVQT TRKVLLSRQK RMSLKINRRS EANVEAVEDA HHSSSSTPPR RGCNCKKSSC  180
LKKYCDCYQD GTGCSLFCRC EDCRNPFGKN EGIMAEESKR FLYTGADLDH SEDEQDFIVE  240
RSPRLQSPIS KESSFQQTPP HIRATNRDTH MFPQAISQWQ PRSWHCSKRQ SNDRVIDDSG  300
EYKNSNHDWQ LAKPEDSYSI SRCVQILNGM AELSQVEKSV APDVFLQAGN REIFISLNGD  360
VRALWLKRKI QNLT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	1e-45	CPP family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G23510.1