PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G23020.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 425aa    MW: 45476.9 Da    PI: 5.9706
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G23020.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS257.74.3e-79374232374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely..kalppsetsekn...sseelaalkl..fsevs 88 
                      ++lLl+cA a++s+d +laq++++ l+++as++gdp qRl++ +++AL ar  r +      +a++  e    +     +++++++l  +++++
  OGLUM05G23020.1  37 QQLLLHCAAALESNDVTLAQQAMWVLNNIASSQGDPSQRLTSWLLRALVARACRLCAAAPagAAVEFLERG--RappWGRAMSVMELadYVDLT 128
                      699***************************************************44443300333333333..2456566666667788***** PP

             GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefn 179
                      P+++f++ + N aIl+av+g+++vH++D+++++++QWp+L++ L++Rp+g+p +RiT+ +   ++    + + +e+g rLa fA++ gv++efn
  OGLUM05G23020.1 129 PWHRFGFTASNAAILRAVAGASAVHVVDLSVTHCMQWPTLIDVLSKRPGGAPAIRITVPSVRPAVpplLAVSSSELGARLAIFAKSKGVQLEFN 222
                      *********************************************************9887555578889999********************* PP

             GRAS 180 vl..............vakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                      v+              ++++l+++  ++ +L ++ gEa++Vn++  l ++       +++rd +L++v+ l+P +v+v++++ad++s+s++ r+
  OGLUM05G23020.1 223 VVesatttspkktsttLCQELASVlsDPPSLGLRDGEAVVVNCQSWLRHVA------PDTRDLFLDTVRALNPCLVTVTDEDADLGSPSLASRM 310
                      **998888776655443344443367888889999************9998......66789******************************** PP

             GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
                      + ++++++ l+d+l++++p++s  r   E++ +gr+i++v+  e  +  er e  ++  er+++ GF  v ++e+aa+++ +ll++++  g+ v
  OGLUM05G23020.1 311 AGCFDFHWILLDALDMSAPKDSPRRLEQEAA-VGRKIESVIGEEDGA--ERSEPGARLAERMSRKGFAGVVFDEEAAAEVWRLLSEHA-TGWGV 400
                      *************************999999.**********99988..9**************************************.99*** PP

             GRAS 352 eeesgslvlgWkdrpLvsvSaWr 374
                      + e++ lvl+Wk+++ v++ aW+
  OGLUM05G23020.1 401 KREDDMLVLTWKGHAAVFTGAWT 423
                      **********************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    
MDMEHELRGG GVGAAAHGHG SICFSGGPVL VDGRRIQQLL LHCAAALESN DVTLAQQAMW  60
VLNNIASSQG DPSQRLTSWL LRALVARACR LCAAAPAGAA VEFLERGRAP PWGRAMSVME  120
LADYVDLTPW HRFGFTASNA AILRAVAGAS AVHVVDLSVT HCMQWPTLID VLSKRPGGAP  180
AIRITVPSVR PAVPPLLAVS SSELGARLAI FAKSKGVQLE FNVVESATTT SPKKTSTTLC  240
QELASVLSDP PSLGLRDGEA VVVNCQSWLR HVAPDTRDLF LDTVRALNPC LVTVTDEDAD  300
LGSPSLASRM AGCFDFHWIL LDALDMSAPK DSPRRLEQEA AVGRKIESVI GEEDGAERSE  360
PGARLAERMS RKGFAGVVFD EEAAAEVWRL LSEHATGWGV KREDDMLVLT WKGHAAVFTG  420
AWTPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-95GRAS family protein