PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G22800.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 646aa MW: 70228.1 Da PI: 9.4648

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G22800.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.6	1.6e-06	123	143	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + C f+a+ G Ck G +C+F H OGLUM05G22800.1 123 RTCTFYAQ-GRCKNGKSCTFLH 143 78****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence
MAGGGRGAGL PAAGEAAKAG RVGVGTTKRA RDPSPNSKDP NGFVGVIAAE KKPALQLHGD 60 EKYQKKAGND PVPPTIDDTS KTGGLHLHGG HVSQSPPDSN ALSSQRFGSS SPGGDMKNKT 120 RKRTCTFYAQ GRCKNGKSCT FLHEGEVSGS DNQVYGNHGG TGEGSEIQHP SSSKERQFKN 180 SAGSSQHEIY RTLVHAYGED NRGLTHPVVK HSCHMLKASH GFKIGGSLTA NPTNEVVQLP 240 VVQEKNHEPY FMGHQISLGT NNCLNDMGAY SRLRLDGGKL QFEVAKGDSP RDSHLSRSYL 300 EKNPLKPDYR YQPFDSTISL DPHQYSKKLS AYGGATENLP HKHQEEKSSS HVSYSLNSYT 360 GFRKQGHDSS DFFLVNQSLR ATSHHGTLPL HQLTPDKDAS HHKGADFDKG GTSRSTLLVS 420 SSSQPVVASA GKLSPIKDEV WITSVPFVPS FNFPDFPGST SPSKSQYDPL VDSIDPPKVE 480 SLNNLKTSNI SCSISSQHVD MNVIRGGSLE KPLTFADKLA RNVSAKGSND FGLISYDRGH 540 SSSLDGDNRV KTCERKNDAS LNNEKSDFRF HLVEHVKELV KPIWKEGNLS KEAHKLIVKK 600 SVDKIFASLE PNQMPETEKA ITTYITASAP KIEKLVKAYV DRHRTS

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence

MAGGGRGAGL PAAGEAAKAG RVGVGTTKRA RDPSPNSKDP NGFVGVIAAE KKPALQLHGD  60
EKYQKKAGND PVPPTIDDTS KTGGLHLHGG HVSQSPPDSN ALSSQRFGSS SPGGDMKNKT  120
RKRTCTFYAQ GRCKNGKSCT FLHEGEVSGS DNQVYGNHGG TGEGSEIQHP SSSKERQFKN  180
SAGSSQHEIY RTLVHAYGED NRGLTHPVVK HSCHMLKASH GFKIGGSLTA NPTNEVVQLP  240
VVQEKNHEPY FMGHQISLGT NNCLNDMGAY SRLRLDGGKL QFEVAKGDSP RDSHLSRSYL  300
EKNPLKPDYR YQPFDSTISL DPHQYSKKLS AYGGATENLP HKHQEEKSSS HVSYSLNSYT  360
GFRKQGHDSS DFFLVNQSLR ATSHHGTLPL HQLTPDKDAS HHKGADFDKG GTSRSTLLVS  420
SSSQPVVASA GKLSPIKDEV WITSVPFVPS FNFPDFPGST SPSKSQYDPL VDSIDPPKVE  480
SLNNLKTSNI SCSISSQHVD MNVIRGGSLE KPLTFADKLA RNVSAKGSND FGLISYDRGH  540
SSSLDGDNRV KTCERKNDAS LNNEKSDFRF HLVEHVKELV KPIWKEGNLS KEAHKLIVKK  600
SVDKIFASLE PNQMPETEKA ITTYITASAP KIEKLVKAYV DRHRTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-14	C3H family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G22800.1