PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G19970.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TALE

Protein Properties

Length: 578aa MW: 61986.2 Da PI: 8.2236

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G19970.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.2	1.8e-10	356	393	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ ++++ LAk++gLt +qV++WF N R + OGLUM05G19970.1 356 FEHflHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVR 393 554459******************************88 PP
2	BELL	91.7	7.2e-30	223	292	3	72
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +e q +k++L+sl+e V+krY+qy++qlq+v+ssFe+vagl +a+p++s+Al+++S+hF+ Lk i +q+ OGLUM05G19970.1 223 AEQQWRKTRLISLMEDVCKRYRQYYQQLQAVVSSFETVAGLSNAAPFASMALRTMSKHFKYLKGIILNQL 292 58899*************************************************************9996 PP

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence
MSSAAGGGGG YGGGGGEHQH QQQQHHLLLG QAAGQLYHVP QHSRREKLRF PPDHPAESPP 60 PPPPGSWPLP PAFYSYASSS SSYSPHSPTL AHAQLVAHGM PPGAATSGGA QIPSQNFALS 120 LSSASSNPPP TPRRQFGGGG GGAAGPYGPF TGYAAVLGRS RFLGPAQKLL EEICDVGGRP 180 AQLDRGSDEG LLDVDAMDAA GSVDHEMDGS DRAVADAVTV SGAEQQWRKT RLISLMEDVC 240 KRYRQYYQQL QAVVSSFETV AGLSNAAPFA SMALRTMSKH FKYLKGIILN QLRNTGKGAT 300 KDGLGKEDTA NFGLMGGGAG LLRGNNVNSF SQPHNIWRPQ RGLPERAVSV LRAWLFEHFL 360 HPYPTDSDKQ MLAKQTGLTR NQVSNWFINA RVRLWKPMVE EIHNLEMRQL QKNPSLDKNQ 420 LSMQHTQHSS ESSGKPCDPS NSLQGQSSSM TRNHSISASR HIEDGLSQMP HDISGQVSFA 480 YNGLAAHHSI AMAHHHQPDL IGTGGAANAG GVSLTLGLHQ NNNRAYIAEP LPAALPLNLA 540 HRFGLEDVSD AYVMSSFGGQ DRHFTKEIGG HLLHDFVG

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence

MSSAAGGGGG YGGGGGEHQH QQQQHHLLLG QAAGQLYHVP QHSRREKLRF PPDHPAESPP  60
PPPPGSWPLP PAFYSYASSS SSYSPHSPTL AHAQLVAHGM PPGAATSGGA QIPSQNFALS  120
LSSASSNPPP TPRRQFGGGG GGAAGPYGPF TGYAAVLGRS RFLGPAQKLL EEICDVGGRP  180
AQLDRGSDEG LLDVDAMDAA GSVDHEMDGS DRAVADAVTV SGAEQQWRKT RLISLMEDVC  240
KRYRQYYQQL QAVVSSFETV AGLSNAAPFA SMALRTMSKH FKYLKGIILN QLRNTGKGAT  300
KDGLGKEDTA NFGLMGGGAG LLRGNNVNSF SQPHNIWRPQ RGLPERAVSV LRAWLFEHFL  360
HPYPTDSDKQ MLAKQTGLTR NQVSNWFINA RVRLWKPMVE EIHNLEMRQL QKNPSLDKNQ  420
LSMQHTQHSS ESSGKPCDPS NSLQGQSSSM TRNHSISASR HIEDGLSQMP HDISGQVSFA  480
YNGLAAHHSI AMAHHHQPDL IGTGGAANAG GVSLTLGLHQ NNNRAYIAEP LPAALPLNLA  540
HRFGLEDVSD AYVMSSFGGQ DRHFTKEIGG HLLHDFVG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02030.1	9e-68	TALE family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G19970.1