PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G19620.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 344aa    MW: 36630.1 Da    PI: 6.2627
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G19620.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.7e-17163210555
              AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      GVr ++ +g+++AeIrd + ng  +r++lg+f t+e+Aa a+++a+++ +g
  OGLUM05G19620.1 163 GVRKRP-WGKYAAEIRDSTRNG--ARVWLGTFNTPEQAALAYDQAALSVRG 210
                      9*****.**********44465..***********************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    
MEPNYSDYHP NSVPFDAYYE HGHGHLDDHG HGHHHLIPAH PEPSYSYGNW SFLHADATAT  60
SSSESSSASA SSGAAHIVGA SGPSASFVRQ LHFGGEYYDD DAADISALME AASISCWTTN  120
GGAGASTSQT TGLEGVEVMR RAAAPAPDNG SSDKEEAARP LIGVRKRPWG KYAAEIRDST  180
RNGARVWLGT FNTPEQAALA YDQAALSVRG PGAVLNYPLH RVRESLRTLE LAAAAAASES  240
PVLTLKRRHR IRKRSTTKKA PAGKEADEAP ATTSSEGKKK RQVNTTSHSH DGKQDQTSSP  300
CVLELEDLGT DYLEELLALS EEQPRMAPTP PLLRAALDGG VDGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-38ERF family protein