PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G17630.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 282aa MW: 28173.4 Da PI: 8.1341

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G17630.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140	7.9e-44	42	140	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+++l OGLUM05G17630.1 42 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVGVISVLQHQLRQLQQDL 135 7********************************************************************************************* PP DUF260 95 allke 99 ++++ OGLUM05G17630.1 136 SRARF 140 99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence
MAASSSASSL PLSSGSVITV SSSPAVGASS GGGGGGGGTG SPCAACKFLR RKCQPDCVFA 60 PYFPPDNPQK FVHVHRVFGA SNVTKLLNEL HPYQREDAVN SLAYEADMRL RDPVYGCVGV 120 ISVLQHQLRQ LQQDLSRARF ELSKYQAAVA VSSSNGQAAA AAAMADHFIG SAVQPNCTQN 180 FISGGGVAAA AIGVGGGAGG GFVNDHHQFS AVQMLARSYD GESAVARLGG AVNVSGGGGY 240 EFGYSSAMGG AGGPMSGLGP LGGGTFLKPG TAGGGDRPTA AQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.3	6e-54	LBD family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G17630.1