PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G15890.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 405aa    MW: 44482.9 Da    PI: 7.9748
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G15890.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.66.2e-1388144155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  OGLUM05G15890.1  88 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 144
                      57*******************6666777775555599******************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    
MASPGPAAGM QQKQEAAAAA AGGGDGAEWG RGMQKMEAVG AGGEGVGVGA EQVAPPPRRP  60
VAARKERVCT AKERISRMPP CAAGKRSSIY RGVTRHRWTG RYEAHLWDKS TWNQNQNKKG  120
KQGAYDDEEA AARAYDLAAL KYWGAGTQIN FPVSDYARDL EEMQMISKED YLVSLRRQLH  180
NSRWDASLGH LLGNDYMSLG KDITLDGKFA GTFGLERKID LTNYIRWWLP KKTRQSDTSK  240
MEEVTDEIRA IESSMQRTEP YKFPSLGLHS NSKPSSVVLS ACDILSQSDA FKSFSEKSTK  300
LSEECTFSKE MDEGKTVTPV PATGHDTTAV NMNVNGLLVQ RAPYTLPSVT AQMKNTWNPA  360
DPSADPLFWT NFILPASQPV TMATIATTTF AKNEVSSSDP FHGQE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.18e-88AP2 family protein