PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G15270.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 797aa    MW: 81598.2 Da    PI: 8.036
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G15270.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS224.64.7e-6937475235374
             GRAS  35 gdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege.ervHiiDfdis.qGlQWp 126
                      g++ qRla+ f+eALa r    +++++++l+ +++++     + aa++ f  ++P+++++  +aN  I e +e e   vH++D++ +    QW+
  OGLUM05G15270.1 374 GRSAQRLASAFAEALALRFILPCDGVCRSLHLTQAPP--PPAVSAARQGFRAMCPFVRLAAAAANLSIAEVMEAErGVVHVVDLGGGvDANQWV 465
                      6799**************************9999986..6677789999**************************7788*****9763699*** PP

             GRAS 127 aLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.......eleeLrvkpgEalaVnlvlqlhr 212
                       L +  a+Rp+g p  lR+T+v++    s++ l++ +   a  A++l+++++f+++  +++e+l         ++L v pg  laV   lq+hr
  OGLUM05G15270.1 466 ELVRLVAARPGGRPgLLRLTVVNE----SEDFLSAAAAYVAAEAQRLDLSLQFHPV-LSSIEELsatatgsIGSRLVVIPGQPLAVVANLQIHR 554
                      **********888879********....9**************************5.66666662222222235678888************** PP

             GRAS 213 ll........................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres.. 279
                      ll                           ++++ + d++L+++++l+Pk+vv++e+eadhn +++ +r+ +al+yy+alfd++ +++ p+++  
  OGLUM05G15270.1 555 LLafpddvdgvasrrpaaeqsgsskhMMMTTTKTKADALLRAIRDLNPKLVVLTENEADHNVAELGARVWNALNYYAALFDAVeASSTPPAAvp 648
                      *********************9998633333333679**********************************************55556666689 PP

             GRAS 280 .eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg.......yrveeesgslv.lgWk 363
                       +er+ vEr +lg+ei+++v  eg+ rrerhetl++W er+ +aGF+pv+     a++ ++l ++++   g        r  +  g++  ++W 
  OGLUM05G15270.1 649 pHERACVERWVLGEEIKDIVVREGTGRRERHETLGRWAERMVAAGFSPVTAARALAST-ETLAQQMAaAGGggagagvLRAAHGGGCFPvICWC 741
                      9************************************************987655555.5555555423334555544444455777757**** PP

             GRAS 364 drpLvsvSaWr 374
                      d p++svS W+
  OGLUM05G15270.1 742 DVPVFSVSTWT 752
                      **********5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 797 aa     Download sequence    
MVAEILRVAL GGGGGAGERL PAAGEDSAAA TNTGKRPLVR SSLAAMVVVV AGIQPDAFAL  60
GWPAEYPAGD RERDLLMVRF LRSIAAFLAD GTCQMQVNDG LSCVVDLAGG VGGGRSEQRA  120
ASVCLRRGAR AVVHPAMRRS GPLGGSLRRR HRCGCRRRLV LVVLVHRAHA TAATVCRRRA  180
RRRQCGGSDE GSGKVTMAAE IPRLALGGGG GGGEQLPGPP MAAVEEDLPA ATSTRKRLVG  240
TSGNLTMAAE IPRLALGGGG GGAGGERLPA AGEDSAAAAT NAGKRPVVGL GFGSSLAAMA  300
AAAAAGIQPD AFALGGPAEY PAGDAERDVL MVSFLRSIAA FLADGTCQMQ VNDGLSCVVD  360
LAGGDADGDG VGGGRSAQRL ASAFAEALAL RFILPCDGVC RSLHLTQAPP PPAVSAARQG  420
FRAMCPFVRL AAAAANLSIA EVMEAERGVV HVVDLGGGVD ANQWVELVRL VAARPGGRPG  480
LLRLTVVNES EDFLSAAAAY VAAEAQRLDL SLQFHPVLSS IEELSATATG SIGSRLVVIP  540
GQPLAVVANL QIHRLLAFPD DVDGVASRRP AAEQSGSSKH MMMTTTKTKA DALLRAIRDL  600
NPKLVVLTEN EADHNVAELG ARVWNALNYY AALFDAVEAS STPPAAVPPH ERACVERWVL  660
GEEIKDIVVR EGTGRRERHE TLGRWAERMV AAGFSPVTAA RALASTETLA QQMAAAGGGG  720
AGAGVLRAAH GGGCFPVICW CDVPVFSVST WTARRVLVPA PPLWPPAAAG GAGPSGSGYG  780
GDGPSTASSL AAMWWVG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-33GRAS family protein