PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G13290.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ERF

Protein Properties

Length: 419aa MW: 45148.2 Da PI: 4.5349

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G13290.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.6	1.6e-18	133	183	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+WvAeIr+p + r r +lg+f tae Aa a+++a+++++g OGLUM05G13290.1 133 CDFRGVRQRT-WGKWVAEIREP---N-RqSRLWLGTFPTAEAAACAYDEAARAMYG 183 689**999.******8...3.35**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MTVDQRTTAK AIMPPVEMPP VQPGRKCGGE ESTGNLDSVQ PIAGALPCNE HALLAQQTPK 60 GDAPSVGSKI WKKRPRRSRD GPTSVAETIK RWAELNNQQE LDPQGPKKAR KAPAKGSKKG 120 CMKGKGGPEN TRCDFRGVRQ RTWGKWVAEI REPNRQSRLW LGTFPTAEAA ACAYDEAARA 180 MYGPMARTNF GQHHAPAASV QVAQAAVKCA LPGGGLTASK SRTSTQGASA DVQDVLTGGL 240 SACESTTTTI NNQSDVVSTL HKPEEVSEIS SPLRAPPAVL EDGSNEDKAE SVTYDENIVS 300 QQRAPPEAEA SNGRGEEVFE PLEPIASLPE DQGDYCFDID EMLRMMEADP TNEGLWKGDK 360 DGSDAILELG QDEPFYYEGV DPGMLDNLLR SDEPAWLSAD PAMFISGGFE DDSQFFEGL

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MTVDQRTTAK AIMPPVEMPP VQPGRKCGGE ESTGNLDSVQ PIAGALPCNE HALLAQQTPK  60
GDAPSVGSKI WKKRPRRSRD GPTSVAETIK RWAELNNQQE LDPQGPKKAR KAPAKGSKKG  120
CMKGKGGPEN TRCDFRGVRQ RTWGKWVAEI REPNRQSRLW LGTFPTAEAA ACAYDEAARA  180
MYGPMARTNF GQHHAPAASV QVAQAAVKCA LPGGGLTASK SRTSTQGASA DVQDVLTGGL  240
SACESTTTTI NNQSDVVSTL HKPEEVSEIS SPLRAPPAVL EDGSNEDKAE SVTYDENIVS  300
QQRAPPEAEA SNGRGEEVFE PLEPIASLPE DQGDYCFDID EMLRMMEADP TNEGLWKGDK  360
DGSDAILELG QDEPFYYEGV DPGMLDNLLR SDEPAWLSAD PAMFISGGFE DDSQFFEGL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	111	KRPRRSRDGPTSVAETIKRWAELNNQQELDPQGPKKARK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05410.2	3e-29	ERF family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G13290.1