PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G12090.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 292aa    MW: 33994.1 Da    PI: 5.0708
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G12090.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1682.3e-2186173188
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                      ++Y++YA++ GF +++s+ ++s+ +++  +++f C  e +++e+  +  +++rr++ + +tgCka+++v k+ d+kw+vt ++l+HnH+
  OGLUM05G12090.1  86 NYYDDYARKWGFITKISSCRRSQITKQYNRYEFACHSERSSRESGASaGSRSRRSSRVLKTGCKARMVVVKR-DEKWVVTIVDLDHNHP 173
                      69************************************999998877567888899999***********99.9**************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MEDNDDRVSA EITTDQENHL KDALIQVFAA TSEHQEGEGE GAEVVQDEEI GEGVEGVRDE  60
EIGDINSKPD KPYVGMEFRD KDEAKNYYDD YARKWGFITK ISSCRRSQIT KQYNRYEFAC  120
HSERSSRESG ASAGSRSRRS SRVLKTGCKA RMVVVKRDEK WVVTIVDLDH NHPPLNPSAL  180
MSLKPHRLIK DEDHDLLEFL RTNKIPTQRI MSVLCDLYGS MQNIPLARKD SFNVEEFERR  240
WAAVLDRYNL ASNKYMQDLY EIREKWVPCY FMDCFFPFMS ITQQSEQMPC WS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-14FAR1 family protein