PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G06980.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

DBB

Protein Properties

Length: 380aa MW: 39545.9 Da PI: 5.3326

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G06980.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.7	3.6e-06	39	77	5	37
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ +e e++ C ++ lC+ C +H H OGLUM05G06980.1 39 LCSACEAAEASVLCCADEAALCARCDRDIHAAnrlagkH 77 7****99*******************544555555 PP
2	zf-B_box	31	5.1e-10	103	143	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 ++kC+ ++e ++ +fC +++ llC++C ++ H H OGLUM05G06980.1 103 PPKCDICQESHAYFFCLEDRALLCRSCDVAVHTAnafvsaH 143 789****99*****************99545566666 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MSPPPPPYYH HLLLRSSPTT TGGGARVLAA AELARMKLLC SACEAAEASV LCCADEAALC 60 ARCDRDIHAA NRLAGKHLRL PLLSPASSSS SSAAALAPPP PSPPKCDICQ ESHAYFFCLE 120 DRALLCRSCD VAVHTANAFV SAHRRFLLTG VQVGQEQDEH SPDPPEPSPP PPPPPPASKS 180 DHPAPLYGEG GGGFSWDAAD SPAAGGLPDW SAVDDQFGSP PPPRHTDTAT VTTPPPPPPT 240 KRSPRAPAFG GQGGMMDWPL GEFFGGFTDF TGGFGFGFGD SGTSKADSGK LGGSTDGSPY 300 YRSSSEDDRN ADELFGQVPE IQWSVPELSS PPTASGLHWQ RHPAAAVSGG GGGPDTTAFV 360 PDICSPDSCF PATTSKRRRQ

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MSPPPPPYYH HLLLRSSPTT TGGGARVLAA AELARMKLLC SACEAAEASV LCCADEAALC  60
ARCDRDIHAA NRLAGKHLRL PLLSPASSSS SSAAALAPPP PSPPKCDICQ ESHAYFFCLE  120
DRALLCRSCD VAVHTANAFV SAHRRFLLTG VQVGQEQDEH SPDPPEPSPP PPPPPPASKS  180
DHPAPLYGEG GGGFSWDAAD SPAAGGLPDW SAVDDQFGSP PPPRHTDTAT VTTPPPPPPT  240
KRSPRAPAFG GQGGMMDWPL GEFFGGFTDF TGGFGFGFGD SGTSKADSGK LGGSTDGSPY  300
YRSSSEDDRN ADELFGQVPE IQWSVPELSS PPTASGLHWQ RHPAAAVSGG GGGPDTTAFV  360
PDICSPDSCF PATTSKRRRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	2e-42	DBB family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G06980.1