PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G06890.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MIKC_MADS

Protein Properties

Length: 212aa MW: 23696.3 Da PI: 4.9428

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G06890.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.1	8.7e-27	36	84	3	51
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ie++ rqvtf+kR ng+lKKA+ELS LCdaeva+i+fss+g+lyeys+ OGLUM05G06890.2 36 IEDTADRQVTFCKRCNGLLKKAYELSMLCDAEVALIVFSSRGRLYEYSN 84 99*********************************************95 PP
2	K-box	20.4	2.2e-08	102	135	4	37
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRh 37 s+ + ++e +a+++qqe+akLk+ i Lq+++R OGLUM05G06890.2 102 SNASTVAEINAQHYQQEAAKLKQHITYLQNSNRT 135 34444999*********************99885 PP

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence
MHIYKEQEAE PSTGLMMPEP APAASPGSGS SDGSGIEDTA DRQVTFCKRC NGLLKKAYEL 60 SMLCDAEVAL IVFSSRGRLY EYSNNSVEET IERYKKANSD TSNASTVAEI NAQHYQQEAA 120 KLKQHITYLQ NSNRTNICET ELQNDNMYSK SEVAESERGL QTVNMMGSAS TSEYVQNMIH 180 YDPGNFLQFN IMQQLASLSI ILNRRTERPH SS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	2e-53	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G06890.2