PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM05G06890.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 212aa MW: 23696.3 Da PI: 4.9428 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.1 | 8.7e-27 | 36 | 84 | 3 | 51 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ie++ rqvtf+kR ng+lKKA+ELS LCdaeva+i+fss+g+lyeys+ OGLUM05G06890.2 36 IEDTADRQVTFCKRCNGLLKKAYELSMLCDAEVALIVFSSRGRLYEYSN 84 99*********************************************95 PP | |||||||
2 | K-box | 20.4 | 2.2e-08 | 102 | 135 | 4 | 37 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRh 37 s+ + ++e +a+++qqe+akLk+ i Lq+++R OGLUM05G06890.2 102 SNASTVAEINAQHYQQEAAKLKQHITYLQNSNRT 135 34444999*********************99885 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence |
MHIYKEQEAE PSTGLMMPEP APAASPGSGS SDGSGIEDTA DRQVTFCKRC NGLLKKAYEL 60 SMLCDAEVAL IVFSSRGRLY EYSNNSVEET IERYKKANSD TSNASTVAEI NAQHYQQEAA 120 KLKQHITYLQ NSNRTNICET ELQNDNMYSK SEVAESERGL QTVNMMGSAS TSEYVQNMIH 180 YDPGNFLQFN IMQQLASLSI ILNRRTERPH SS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 2e-53 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM05G06890.2 |