PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G06450.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 466aa    MW: 49768.9 Da    PI: 8.8048
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G06450.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.31.3e-08184204526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C++f++ G Ck+Gd C FaHg
  OGLUM05G06450.1 184 ACPDFRK-GGCKRGDACEFAHG 204
                      7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    
MVRKRRDTAR VNPTAVSGGG LSGLYSRASS SPPLHHGGSR RRLRTNTLPR RSWRRGEELE  60
SKMMMMGEGA HAPPWQQHVA SPVSGVEGGG GRESEVVAAP YHLLDALRHY LPSNEAAAAE  120
DEEEAAAVAA AVDAYACDEF RMYEFKVRRC ARGRSHDWTE CPFAHPGEKA RRRDPRRYCY  180
SGTACPDFRK GGCKRGDACE FAHGVFECWL HPARYRTQPC KDGTACRRRV CFFAHTPDQL  240
RVLPPSQQQG SNSPRGCGGG GAGAAASPLA ESYDGSPLRR QAFESYLTKS IMSSSPTSTL  300
VSPPRSPPSE SPPLSPDAAG ALRRGAWAGV GSPVNDVLVS LRQLRLGSPR SAPSCASFLP  360
AGYQYGSPKS PAAAAAAALY SLPSTPTRPS PVTVTTASGA TVIVEPLDLG LIEEEQPMER  420
VESGRALREK VFERLSKEAT VSTDAATAAA AAGVAPDVGW VSDLIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.16e-74C3H family protein