PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G02570.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 503aa MW: 52335.4 Da PI: 7.3338

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G02570.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.6	3.4e-30	250	308	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a +Cpv+k+v+r+aed++++++tYeg+H h+ OGLUM05G02570.1 250 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAsQCPVRKQVQRCAEDKSILITTYEGTHSHP 308 7*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence
MEMMVQKQRH EEGEEERGGL CAREIKELDF FSAAGAGAGR RDDDDVLRAD GISSSHAGFM 60 VSTALDLLTA VNDGDHHEEK KGQSNIHKSK QMDAAAATTV EGELRQAGEE NRWLRRRLEE 120 LTSSYGALYH QLVQAQQLHT KHQQQAPIAG VQLLDALAAA SPASHRRRAA AAVDGDRTAD 180 SDGGEGDENV SPSLGSKRPA AAATLTRLTP ESGSGGENNG GGEQAPAAEM APCRKARVSV 240 RARSEAPMIS DGCQWRKYGQ KMAKGNPCPR AYYRCTMASQ CPVRKQVQRC AEDKSILITT 300 YEGTHSHPLP PAAAAMAKTT SAAAAMLLSG PAVSRDGLFA AHHHVVAPPP FFHHPYAGST 360 MATLSASAPF PTITLDLTQP PPTTTTTAAA AMLQLHRPHA FSSLPFSMYG AGGGSHRPPV 420 VLPPPSSVVE TMTAAITRDP NFTTAVAAAL SSIMAGGGAQ ARTPPRGGSD AAGDINGGGG 480 ADHATAGARA AAAATQPCGT SPT

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence

MEMMVQKQRH EEGEEERGGL CAREIKELDF FSAAGAGAGR RDDDDVLRAD GISSSHAGFM  60
VSTALDLLTA VNDGDHHEEK KGQSNIHKSK QMDAAAATTV EGELRQAGEE NRWLRRRLEE  120
LTSSYGALYH QLVQAQQLHT KHQQQAPIAG VQLLDALAAA SPASHRRRAA AAVDGDRTAD  180
SDGGEGDENV SPSLGSKRPA AAATLTRLTP ESGSGGENNG GGEQAPAAEM APCRKARVSV  240
RARSEAPMIS DGCQWRKYGQ KMAKGNPCPR AYYRCTMASQ CPVRKQVQRC AEDKSILITT  300
YEGTHSHPLP PAAAAMAKTT SAAAAMLLSG PAVSRDGLFA AHHHVVAPPP FFHHPYAGST  360
MATLSASAPF PTITLDLTQP PPTTTTTAAA AMLQLHRPHA FSSLPFSMYG AGGGSHRPPV  420
VLPPPSSVVE TMTAAITRDP NFTTAVAAAL SSIMAGGGAQ ARTPPRGGSD AAGDINGGGG  480
ADHATAGARA AAAATQPCGT SPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-44	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G02570.1