PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G02160.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TALE

Protein Properties

Length: 309aa MW: 33234.1 Da PI: 5.0141

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G02160.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.9	2e-09	242	275	22	55
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++e++ +LA+ +gL+ +q+ +WF N+R ++ OGLUM05G02160.2 242 WPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRH 275 59*****************************885 PP
2	ELK	33.1	1.2e-11	195	216	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsg+L+ L++EF+ OGLUM05G02160.2 195 ELKEMLLKKYSGCLSRLRSEFL 216 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence
MEDLYSIHPG ISRGGGGGGG GAASEASGVA GGGSSPPHPP PPATTAAAAD LTELMKAQIA 60 GHPSYPSLLS AYIECRKVGA PPEVTTLLEE IGREGRGGGA TAGGEIGLDP ELDEFMETYC 120 RVLERYKEEL TRPFDEAASF LTGIHTQLAS LCGGAPPPTD NSDEMVGSSE DEPCSGDADA 180 ADFGQEHSSR LADHELKEML LKKYSGCLSR LRSEFLKKRK KGKLPKDARS ALMDWWNTHY 240 RWPYPTEEDK VRLAAMTGLD PKQINNWFIN QRKRHWKPSE DMRFALMEGV TGGSSSGTTL 300 YFDTGTIGP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	220	LRSEFLKKRK
2	217	221	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	4e-77	TALE family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G02160.2