PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM05G01700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 127aa MW: 13749.7 Da PI: 8.2909 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 83.6 | 2.8e-26 | 38 | 122 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+C++ Cvlapyfp ++p+kf +h+ +lpee+r da+ss+vyeA+ar+rdPvyG++g i +lq+q + +k+ OGLUM05G01700.1 38 PCAACKILRRRCVDRCVLAPYFPPTEPHKFTTAHR------------ELPEEQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQWHGAKEFN 119 7*******************************997............99*************************************99888765 PP DUF260 95 all 97 ++l OGLUM05G01700.1 120 SKL 122 555 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence |
MGSSSDTACT VATAPPSPTP TSPPPQLAAT TTTVVLSPCA ACKILRRRCV DRCVLAPYFP 60 PTEPHKFTTA HRELPEEQRA DAVSSMVYEA NARIRDPVYG CAGAICQLQK QWHGAKEFNS 120 KLNHVLN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 7e-39 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM05G01700.1 |