PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G01570.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

AP2

Protein Properties

Length: 486aa MW: 52576.9 Da PI: 7.346

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G01570.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.5	6.1e-17	170	219	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g OGLUM05G01570.1 170 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 219 78*****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MELDLNNVAE GVVEKHETAA RSDSGTSESS VLNGEASGAA AAPAEEGSSS TPPPPPAAVL 60 EFSILRSSAS ASGENDADDD EEEEATPSPP PHHQHQQLLV TRELFPSAAP SPRPAPQHWA 120 ELGFLRPDPP RPHPDIRILA HAPPPAPPPP PPPQPQAAKK SRRGPRSRSS QYRGVTFYRR 180 TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNLSD YEEDMRQMKS 240 LSKEEFVHVL RRQSTGFSRG SSKYRGVTLH KCGRWEARMG QFLGKKAYDK AAIKCNGREA 300 VTNFEPSTYD GELPTDAAAQ GADVDLNLSI SQPAASQQSP KRDSGSLGLQ IHHGSFEAPS 360 ELASRPHRFP LLTEHPPIWT AQPHPLFPNN EDASRSSDQK RKPSEGVAVP SWAWKQVSHH 420 HPAPPHTLPL PFFSSSSSSP SSSSAAASSG FSKAATTAAA AQHTATLRFD PTAPSSSSSS 480 RHHHHH

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MELDLNNVAE GVVEKHETAA RSDSGTSESS VLNGEASGAA AAPAEEGSSS TPPPPPAAVL  60
EFSILRSSAS ASGENDADDD EEEEATPSPP PHHQHQQLLV TRELFPSAAP SPRPAPQHWA  120
ELGFLRPDPP RPHPDIRILA HAPPPAPPPP PPPQPQAAKK SRRGPRSRSS QYRGVTFYRR  180
TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNLSD YEEDMRQMKS  240
LSKEEFVHVL RRQSTGFSRG SSKYRGVTLH KCGRWEARMG QFLGKKAYDK AAIKCNGREA  300
VTNFEPSTYD GELPTDAAAQ GADVDLNLSI SQPAASQQSP KRDSGSLGLQ IHHGSFEAPS  360
ELASRPHRFP LLTEHPPIWT AQPHPLFPNN EDASRSSDQK RKPSEGVAVP SWAWKQVSHH  420
HPAPPHTLPL PFFSSSSSSP SSSSAAASSG FSKAATTAAA AQHTATLRFD PTAPSSSSSS  480
RHHHHH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.2	2e-83	AP2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G01570.1