PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G29070.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 843aa    MW: 93668.1 Da    PI: 5.9778
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G29070.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.41.2e-22161262199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d +  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  OGLUM04G29070.1 161 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 250
                      99***********************9*****86555544..8************************************************..88 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  OGLUM04G29070.1 251 EKNQLLLGIRRA 262
                      99999****997 PP
2Auxin_resp112.63.9e-37287370183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+t+s F+++YnPras+seFv++++k+ ka+  +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k
  OGLUM04G29070.1 287 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 370
                      79*******************************986599******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    
MVAISELGLR VCASLVWSEE EEMSSSSAAS IGPPQPPPPP APPEEGGWLE KKCLNSELWH  60
ACAGPLVCLP TVGTRVVYFP QGHSEQVAAS TNKEVEGHIP NYPNLPAQLI CQLHDVTMHA  120
DVETDEVYAQ MTLQPLNPQE QNDAYLPAEM GIMSKQPTNY FCKTLTASDT STHGGFSVPR  180
RAAERVFPPL DFTQQPPAQE LIARDIHDIE WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV  240
AGDSVLFIWN EKNQLLLGIR RASRPQTVMP SSVLSSDSMH IGLLAAAAHA AATNSRFTIF  300
YNPRASPSEF VIPLSKYIKA VFHTRISVGM RFRMLFETEE SSVRRYMGTI TEVSDADPVR  360
WPSSYWRSVK VGWDESTAGE RPPRVSLWEI EPLTTFPMYP SLFPLRVKHP WYSGVASLHD  420
DSNALMWLRG VAGEGGFQSL NFQSPGIGSW GQQRLHPSLL SSDHDQYQAV VAAAAASQSG  480
GYLKQQFLHL QQPMQSPQEH CNLNPLLQQQ ILQQASQQQI INPDAQNIQT MLSPSAIQQQ  540
LQQMQQVQND QKQKIQPDQS YQVPTSAVLP SPTSLPSHLR EKFGFSDPNA NSSSFITSSS  600
SDNMLDSSFL QGSSKAVDLS RFNQPVASEQ QQQQQQQQAW KQKFMGSQSV SFGGSVLHNS  660
PTSKDGSVEN KIGRDVQNQS LFSPQVDSSS LLYNMVPNLT SNVSDGNLST IPSGSTYLQN  720
AMYGCLDDSS GFLQNTGEND PATRTFVKVY KSGSVGRSLD ITRFSNYAEL REELGQMFGI  780
KGQLDDPDRS GWQLVFVDRE NDVLLLGDDP WESFVNSVWY IKILSPEDVH KMGKQGNDPR  840
YLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein