PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G27380.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

AP2

Protein Properties

Length: 460aa MW: 48475.6 Da PI: 7.0069

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G27380.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.6	5.7e-17	110	159	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g OGLUM04G27380.1 110 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 159 78*****************......55**********************997 PP
2	AP2	46.4	1e-14	202	252	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+eeAa+a+++a+ k +g OGLUM04G27380.1 202 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 252 89******.7**5553..2.26********************99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MWDLNDSPAA EAAPPPLSPS ADDSGASSSS AAAVVEIPDD ADDDSAAVVV VTRQFFPPAV 60 PGGGGDPAPG NARAGWLRLA GAAPPVAATG PAASAAVSKK SRRGPRSRSS QYRGVTFYRR 120 TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFSLED YEDDLKQMSN 180 LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEEEAA 240 RAYDRAAIKC NGKDAVTNFD PSIYAGEFEP PAAATGDAAE HNLDLSLGSS AGSKRGNVDG 300 GGDDEITGGG GGGAGSDQRV PMAFDLDWQT AAARSTKAKF DQNSNHPQMP PVLQVTHLPF 360 SPRHHHQFLS NGDPGTAGGL SLTIGAGMAG HWPPQQQQGW GNAGGMSWPL PPHPPPPPTN 420 AAAAATATAA AASSRFPPYI ATQASTWLQK NGFHSLTRPT

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MWDLNDSPAA EAAPPPLSPS ADDSGASSSS AAAVVEIPDD ADDDSAAVVV VTRQFFPPAV  60
PGGGGDPAPG NARAGWLRLA GAAPPVAATG PAASAAVSKK SRRGPRSRSS QYRGVTFYRR  120
TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFSLED YEDDLKQMSN  180
LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEEEAA  240
RAYDRAAIKC NGKDAVTNFD PSIYAGEFEP PAAATGDAAE HNLDLSLGSS AGSKRGNVDG  300
GGDDEITGGG GGGAGSDQRV PMAFDLDWQT AAARSTKAKF DQNSNHPQMP PVLQVTHLPF  360
SPRHHHQFLS NGDPGTAGGL SLTIGAGMAG HWPPQQQQGW GNAGGMSWPL PPHPPPPPTN  420
AAAAATATAA AASSRFPPYI ATQASTWLQK NGFHSLTRPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	2e-90	AP2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G27380.1