PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G26010.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 838aa    MW: 91019.1 Da    PI: 6.1371
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G26010.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.21.9e-20133189157
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  OGLUM04G26010.1 133 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 189
                      688999************************************************995 PP
2START204.15.6e-643235481206
                      HHHHHHHHHHHHHHHHC-TT-EEEE.........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-S CS
            START   1 elaeeaaqelvkkalaeepgWvkss.........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetla 77 
                      ela +a++elv++a+++ep+W+  +         e + ++e+ + f+++ +      ++ea+r+s+vv+m++a+lve+l+d ++    +++ + 
  OGLUM04G26010.1 323 ELAVAAMEELVRMAQLDEPLWSVAPpldaaaaamETLSEEEYARMFPRGLGpkqygLRSEASRDSAVVIMTHANLVEILMDANQyaaVFSNIVS 416
                      57899********************9*9999999999999999999887779*******************************66666666666 PP

                      EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
            START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                      +a tlev+s+g      galq+m+ e+q++splvp R+++fvRy++q  +g+w++vdvS+ds ++ p    v +++++pSg+li++++ng+skv
  OGLUM04G26010.1 417 RAVTLEVLSTGvagnynGALQVMSVEFQVPSPLVPtRESYFVRYCKQNADGTWAVVDVSLDSLRPSP----VLKCRRRPSGCLIQEMPNGYSKV 506
                      *****************************************************************98....7********************** PP

                      EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      twvehv++++r++h++++ lv+sgla+ga++wv tl+rqce+
  OGLUM04G26010.1 507 TWVEHVEVDDRSVHNIYKLLVNSGLAFGARRWVGTLDRQCER 548
                      ****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    
MIPARHMPSM IGRNGAAYGS SSALSLSQID RTMERREIFQ VADLAHILRG KPVDHLQQPN  60
LLDNHQFQQA FQHQQQQHHL LDQIPATTAE SGDNMIRSRA SDPLGDEFES KSGSENVDGV  120
SVDDQDPNQR PRKKRYHRHT QHQIQEMEAF FKECPHPDDK QRKELSRELG LEPLQVKFWF  180
QNKRTQMKNQ HERHENSQLR SDNEKLRAEN MRYKEALSSA SCPNCGGPAA LGEMSFDEHH  240
LRIENARLRE EIDRISAIAA KYVGKPMVPF PVLSNPMAAA ASRAPLDLPV APYGVPGDMF  300
GGGGAGELLR GVQSEVDKPM IVELAVAAME ELVRMAQLDE PLWSVAPPLD AAAAAMETLS  360
EEEYARMFPR GLGPKQYGLR SEASRDSAVV IMTHANLVEI LMDANQYAAV FSNIVSRAVT  420
LEVLSTGVAG NYNGALQVMS VEFQVPSPLV PTRESYFVRY CKQNADGTWA VVDVSLDSLR  480
PSPVLKCRRR PSGCLIQEMP NGYSKVTWVE HVEVDDRSVH NIYKLLVNSG LAFGARRWVG  540
TLDRQCERLA SVMASNIPTS DIGVITSSEG RKSMLKLAER MVVSFCGGVT ASVAHQWTTL  600
SGSGAEDVRV MTRKSVDDPG RPPGIVLNAA TSFWLPWDIL SNGGIVQEMA HIANGRDQGN  660
CVSLLRVNSS NSNQSNMLIL QESCTDASGS YVIYAPVDVV AMNVVLNGGD PDYVALLPSG  720
FAILPDGPAH DGGGGDGGVG VGSGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIACTV  780
ERIKAAVSGE SNPQSSKILE LSSVGSQERT SDCPCHVFFL AASMKAMLIS VSSSGRVV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein