PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM04G25200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | FAR1 | ||||||||
Protein Properties | Length: 484aa MW: 53730.9 Da PI: 9.7707 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 77.8 | 2.1e-24 | 197 | 280 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Y +YA +vGFsvrk k+ +n +r fvC++eg+r++++ k r+r+etrtgC a++ +k+ ++gk++v++++++HnH+la OGLUM04G25200.1 197 EYYASYAGNVGFSVRKGLWDKTVKN-VARSRVFVCYREGFRSKNEAK-----RPRPETRTGCPARIAIKLVSNGKYRVAEFVEDHNHQLA 280 69****************9999555.599*************98777.....************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence |
MATASTSGDP TAAAGEPTPS SSASAQPRQP PSRISHIVRT YLDLSSNPKK RRAAPKSHPK 60 PAAGQGAPDA GDGKDGGGKA AATPSSAAQP TTTRLLRELG VRVSRYTHEE RRDIVLRYMQ 120 KRSGRQGVKR ATAKAPSRQA LAERRRRGAR GQFLGKEGAK TVDKPEEDPE VPPEVIANAG 180 GVPIVGMVFE NEEKAYEYYA SYAGNVGFSV RKGLWDKTVK NVARSRVFVC YREGFRSKNE 240 AKRPRPETRT GCPARIAIKL VSNGKYRVAE FVEDHNHQLA APFDIDMLKS EREFTHDFHH 300 CMFDIEDDQE FDEIWNVIIK KYSLKGEECN EVEKSTGKKK TEVYRHKSAV VTNKRQKTRK 360 DTRHPDEAAT GTRDGELNMT PDNRQSEARN SPNQFLPDQL MQGHYILGQS YGLGTSENLH 420 NNLNQFGQAS SLPTMQQQAF PGNNQLTQGY PSDMHALQFV GANPQMEHQN GDQGQSSIPV 480 WDFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 242 | 246 | KRPRP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-14 | FAR1 family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM04G25200.1 |