PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G21960.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 306aa MW: 32743.4 Da PI: 8.5463

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G21960.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.2	1.2e-30	23	76	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt eLH +Fv+a+e LGG++kAtPk il+lm+vkgLt++hvkSHLQ+YR OGLUM04G21960.1 23 PRLRWTGELHCSFVQAIEFLGGQDKATPKLILQLMGVKGLTISHVKSHLQMYRC 76 8****************************************************6 PP
2	Myb_DNA-binding	45	2.5e-14	24	75	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT e++ +v+a++ lGg t+k+I + mg kg+t ++ks++q+y+ OGLUM04G21960.1 24 RLRWTGELHCSFVQAIEFLGGQdkaTPKLILQLMGvKGLTISHVKSHLQMYR 75 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence
MGSGGGGCGR NGAVRQYIRS KVPRLRWTGE LHCSFVQAIE FLGGQDKATP KLILQLMGVK 60 GLTISHVKSH LQMYRCSRLG SHGTGRRSEM QPQLQRKHSC GADEQVPREF LCPPLKRTRM 120 GTEATYKGMQ GSQGISEMRT TGTQYCIDDY MQAMAMERRI KEEGLRWQRD AAAAAAADGG 180 AAASNLQTVG CSVQESDPFK IIKPEVHHLG PVLKLQCSKV ENSGFISSST GTAARDQPEP 240 PPLEKCSLSL SLGPDPKCMP AIASSPSESS CILSSSSRSF SDCSGNSGCL VAPGVNLELS 300 MSICGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	6e-29	G2-like family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G21960.1