PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G21810.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 339aa MW: 38774 Da PI: 8.4571

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G21810.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82	5.9e-26	200	249	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l d+++yF+lpi++A+++L++++++LKr+CRqy+I+RWPhRkiksl OGLUM04G21810.1 200 ASITLVDIAQYFHLPIREASRTLKIGVSILKRKCRQYNIPRWPHRKIKSL 249 78**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MDAAASAVST LSALAVFAST LDHGAVRSVH GYKVYGRGGR RRWERWVERE FVLTPASCRE 60 VPAPVAPPRI LPAEWRGRPA YREGQVVAAG AWRCILAFDS AAAPPRTPPP VLSPFLNPRL 120 MCVPSLYNDL EKVFRFQNVE KIPKLMQCDS EEKLSSWDAR DKSSDEVHAS ESDSDDDLQS 180 GEEEKPTVQK QRRANKKHIA SITLVDIAQY FHLPIREASR TLKIGVSILK RKCRQYNIPR 240 WPHRKIKSLD SLIQDLEYVI DDGDDHDDTG DDVQQEKHKQ TAEEKQEAIM ALTRRKQMLE 300 TEKETIQQIP AMDLKVETKQ FREDVFKRRY RAKKDLAND

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	328	335	RRYRAKKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-45	Nin-like family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G21810.1