PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G20750.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 284aa    MW: 29635.4 Da    PI: 5.203
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G20750.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-19116166155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr+++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  OGLUM04G20750.1 116 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 166
                      57*****887.**********843...6***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MEADASHTPT TSSSVSVSFS SSSLSASSST SSLVDNGAQD RPKSSKPKHA AKKRKRAAAE  60
EPANAAHGAG EDTSSCSTDD NAAASGKAQA GGGGGGVDSS STCTAASAPR SGFKHPSYRG  120
VRRRSWGKWV SEIREPRKKS RIWLGTFPTA EMAARAHDVA ALAIKGRYAH LNFPDSAHEL  180
PRPASTSPAD IQAAAAKAAA EVRCEEESSP LSSPTAEQPE EEAACPDTVH ADGGQDNALF  240
DLPDLLLDLR DGLWWSPVWP AALTAEEYDG GDAVVLNEPL LWAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14755PKHAAKKRK
25157AKKRKRA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.18e-43ERF family protein