PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM04G20210.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 659aa MW: 71331.9 Da PI: 9.4319 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 100.5 | 1.4e-31 | 98 | 182 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laLi++r+em+ ++r++ lk+plWeevs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s +++f++lea OGLUM04G20210.3 98 RWPREETLALIRIRSEMDATFRDATLKGPLWEEVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFTELEA 182 8*********************************************************************866665..******985 PP | |||||||
2 | trihelix | 108 | 6.2e-34 | 490 | 574 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r e++ r++++ k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+ OGLUM04G20210.3 490 RWPKTEVQALIQLRMELDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLD 574 8*********************************************************************8.99**********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 659 aa Download sequence |
MQQHQGGGSQ YGAVPPDMGP FSPTHHASAP APLPLSSRPP PAALSQPPPP QQQQQPRTSY 60 DELAAATSAG AGGFPDDDML GDAGGSGGGG GSGAAGNRWP REETLALIRI RSEMDATFRD 120 ATLKGPLWEE VSRKLAELGY KRSAKKCKEK FENVHKYYKR TKEGRAGRQD GKSYRFFTEL 180 EALHAAAPQT PQPQQHQQQQ LPPVTSSAPA MHAFAPPVPA PPPMSVMPPP PGPIQPAPIS 240 SAAPAVPLEL PPQPPINLQS LSFSSMSGSE SDDESEDDEM TAETGGSQDR LGKRKRGAGG 300 KRLATFFEGL IKQVVDRQEE MQRRFLETME KREAERTARE EAWRRQEVAR LNREQEQLAQ 360 ERAAAASRDA AIISFLQRIG GQSVQVPPAA TVIQMPTPVQ LQTPPPVKQP ARQHQPQPTP 420 PPPQAAPIPA APLQQQPPQP QHKETIHHEA VTPRSAPPTS GSSLELVPAA EQHVESGLGG 480 GEGGSASSSR WPKTEVQALI QLRMELDMRY QETGPKGPLW EEISSGMRRL GYNRSSKRCK 540 EKWENINKYF KKVKESNKKR PEDSKTCPYF HQLDVIYRRK HLTGGGGGGA SAANVAAMAI 600 EHQNPNRHEI EGKNINDNDK RKNGGGGGAQ VPTSNGDTAP TTATFDVDSG MKKVISILA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 149 | KRSAKKCKE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 4e-48 | Trihelix family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM04G20210.3 |